2411 related articles for article (PubMed ID: 9918945)
1. Profile hidden Markov models.
Eddy SR
Bioinformatics; 1998; 14(9):755-63. PubMed ID: 9918945
[TBL] [Abstract][Full Text] [Related]
2. Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure.
Gough J; Karplus K; Hughey R; Chothia C
J Mol Biol; 2001 Nov; 313(4):903-19. PubMed ID: 11697912
[TBL] [Abstract][Full Text] [Related]
3. Protein homology detection by HMM-HMM comparison.
Söding J
Bioinformatics; 2005 Apr; 21(7):951-60. PubMed ID: 15531603
[TBL] [Abstract][Full Text] [Related]
4. Accelerated Profile HMM Searches.
Eddy SR
PLoS Comput Biol; 2011 Oct; 7(10):e1002195. PubMed ID: 22039361
[TBL] [Abstract][Full Text] [Related]
5. Fitting hidden Markov models of protein domains to a target species: application to Plasmodium falciparum.
Terrapon N; Gascuel O; Maréchal E; Bréhélin L
BMC Bioinformatics; 2012 May; 13():67. PubMed ID: 22548871
[TBL] [Abstract][Full Text] [Related]
6. HHsenser: exhaustive transitive profile search using HMM-HMM comparison.
Söding J; Remmert M; Biegert A; Lupas AN
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W374-8. PubMed ID: 16845029
[TBL] [Abstract][Full Text] [Related]
7. Predicting protein structure using hidden Markov models.
Karplus K; Sjölander K; Barrett C; Cline M; Haussler D; Hughey R; Holm L; Sander C
Proteins; 1997; Suppl 1():134-9. PubMed ID: 9485505
[TBL] [Abstract][Full Text] [Related]
8. Alignment of multiple proteins with an ensemble of hidden Markov models.
Song J; Liu C; Song Y; Qu J; Hura GS
Int J Data Min Bioinform; 2010; 4(1):60-71. PubMed ID: 20376922
[TBL] [Abstract][Full Text] [Related]
9. HMM-ModE--improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying emission probabilities with negative training sequences.
Srivastava PK; Desai DK; Nandi S; Lynn AM
BMC Bioinformatics; 2007 Mar; 8():104. PubMed ID: 17389042
[TBL] [Abstract][Full Text] [Related]
10. A profile hidden Markov model for signal peptides generated by HMMER.
Zhang Z; Wood WI
Bioinformatics; 2003 Jan; 19(2):307-8. PubMed ID: 12538263
[TBL] [Abstract][Full Text] [Related]
11. HH-suite3 for fast remote homology detection and deep protein annotation.
Steinegger M; Meier M; Mirdita M; Vöhringer H; Haunsberger SJ; Söding J
BMC Bioinformatics; 2019 Sep; 20(1):473. PubMed ID: 31521110
[TBL] [Abstract][Full Text] [Related]
12. Hidden Markov models-based system (HMMSPECTR) for detecting structural homologies on the basis of sequential information.
Tsigelny I; Sharikov Y; Ten Eyck LF
Protein Eng; 2002 May; 15(5):347-52. PubMed ID: 12034853
[TBL] [Abstract][Full Text] [Related]
13. Hidden Markov model speed heuristic and iterative HMM search procedure.
Johnson LS; Eddy SR; Portugaly E
BMC Bioinformatics; 2010 Aug; 11():431. PubMed ID: 20718988
[TBL] [Abstract][Full Text] [Related]
14. Hidden Markov models for sequence analysis: extension and analysis of the basic method.
Hughey R; Krogh A
Comput Appl Biosci; 1996 Apr; 12(2):95-107. PubMed ID: 8744772
[TBL] [Abstract][Full Text] [Related]
15. webPRC: the Profile Comparer for alignment-based searching of public domain databases.
Brandt BW; Heringa J
Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W48-52. PubMed ID: 19420063
[TBL] [Abstract][Full Text] [Related]
16. MUMMALS: multiple sequence alignment improved by using hidden Markov models with local structural information.
Pei J; Grishin NV
Nucleic Acids Res; 2006; 34(16):4364-74. PubMed ID: 16936316
[TBL] [Abstract][Full Text] [Related]
17. A comparison of profile hidden Markov model procedures for remote homology detection.
Madera M; Gough J
Nucleic Acids Res; 2002 Oct; 30(19):4321-8. PubMed ID: 12364612
[TBL] [Abstract][Full Text] [Related]
18. Profile Hidden Markov Models Are Not Identifiable.
Pattabiraman S; Warnow T
IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(1):162-172. PubMed ID: 31425043
[TBL] [Abstract][Full Text] [Related]
19. Meta-MEME: motif-based hidden Markov models of protein families.
Grundy WN; Bailey TL; Elkan CP; Baker ME
Comput Appl Biosci; 1997 Aug; 13(4):397-406. PubMed ID: 9283754
[TBL] [Abstract][Full Text] [Related]
20. HMMEditor: a visual editing tool for profile hidden Markov model.
Dai J; Cheng J
BMC Genomics; 2008; 9 Suppl 1(Suppl 1):S8. PubMed ID: 18366621
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]