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  • Title: Cantilever-based optical deflection assay for discrimination of DNA single-nucleotide mismatches.
    Author: Hansen KM, Ji HF, Wu G, Datar R, Cote R, Majumdar A, Thundat T.
    Journal: Anal Chem; 2001 Apr 01; 73(7):1567-71. PubMed ID: 11321310.
    Abstract:
    Characterization of single-nucleotide polymorphisms is a major focus of current genomics research. We demonstrate the discrimination of DNA mismatches using an elegantly simple microcantilever-based optical deflection assay, without the need for external labeling. Gold-coated silicon AFM cantilevers were functionalized with thiolated 20- or 25-mer probe DNA oligonucleotides and exposed to target oligonucleotides of varying sequence in static and flow conditions. Hybridization of 10-mer complementary target oligonucleotides resulted in net positive deflection, while hybridization with targets containing one or two internal mismatches resulted in net negative deflection. Mismatched targets produced a stable and measurable signal when only a four-base pair stretch was complementary to the probe sequence. This technique is readily adaptable to a high-throughput array format and provides a distinct positive/negative signal for easy interpretation of oligonucleotide hybridization.
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