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  • Title: Nucleic acid base pair dynamics: the impact of sequence and structure using free-energy calculations.
    Author: Giudice E, Lavery R.
    Journal: J Am Chem Soc; 2003 Apr 30; 125(17):4998-9. PubMed ID: 12708848.
    Abstract:
    Molecular dynamics free-energy calculations of base pair opening within double helical DNA and RNA are used to explain why A-tracts (oligo-adenine repeats) greatly increase the lifetimes of AT base pairs, whereas the structural and the chemical changes involved in passing from B-DNA to A-RNA have comparatively small effects.
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