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  • Title: OBIYagns: a grid-based biochemical simulator with a parameter estimator.
    Author: Kimura S, Kawasaki T, Hatakeyama M, Naka T, Konishi F, Konagaya A.
    Journal: Bioinformatics; 2004 Jul 10; 20(10):1646-8. PubMed ID: 14962919.
    Abstract:
    UNLABELLED: OBIYagns (yet another gene network simulator) is a biochemical system simulator that comprises a multiple-user Web-based graphical interface, an ordinary differential equation solver and a parameter estimators distributed over an open bioinformatics grid (OBIGrid). This grid-based biochemical simulation system can achieve high performance and provide a secure simulation environment for estimating kinetic parameters in an acceptable time period. OBIYagns can be applied to larger system biology-oriented simulation projects. AVAILABILITY: OBIYagns example models, methods and user guide are available at https://access.obigrid.org/yagns/ SUPPLEMENTARY INFORMATION: Please refer to Bioinformatics online.
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