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  • Title: MSDsite: a database search and retrieval system for the analysis and viewing of bound ligands and active sites.
    Author: Golovin A, Dimitropoulos D, Oldfield T, Rachedi A, Henrick K.
    Journal: Proteins; 2005 Jan 01; 58(1):190-9. PubMed ID: 15468317.
    Abstract:
    The three-dimensional environments of ligand binding sites have been derived from the parsing and loading of the PDB entries into a relational database. For each bound molecule the biological assembly of the quaternary structure has been used to determine all contact residues and a fast interactive search and retrieval system has been developed. Prosite pattern and short sequence search options are available together with a novel graphical query generator for inter-residue contacts. The database and its query interface are accessible from the Internet through a web server located at: http://www.ebi.ac.uk/msd-srv/msdsite.
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