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  • Title: Model for DNA hairpin denaturation.
    Author: Cuesta-López S, Peyrard M, Graham DJ.
    Journal: Eur Phys J E Soft Matter; 2005 Mar; 16(3):235-46. PubMed ID: 15726245.
    Abstract:
    We investigate the thermal denaturation of DNA hairpins using molecular dynamics simulations of a simple model describing the molecule at a scale of a nucleotide. The model allows us to analyze the different interacting features that determine how an hairpin opens, such as therole of the loop and the properties intrinsic to the stem.
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