These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


Pubmed for Handhelds

PUBMED FOR HANDHELDS

Search MEDLINE/PubMed

  • Title: Temperature effects on the structural and dynamical properties of the Zn(II)-water complex in aqueous solution: a QM/MM molecular dynamics study.
    Author: Fatmi MQ, Hofer TS, Randolf BR, Rode BM.
    Journal: J Phys Chem B; 2006 Jan 12; 110(1):616-21. PubMed ID: 16471574.
    Abstract:
    An ab initio quantum mechanical/molecular mechanical (QM/MM) molecular dynamics (MD) simulation at double-zeta restricted Hartree-Fock (RHF) level was performed at an elevated temperature of 363 K (90 degrees C) to study the temperature effects on the structural and dynamical properties of a Zn(II)-water complex in aqueous solution. The first hydration shell, consisting of 6 water molecules at a mean Zn-O distance of 2.16 A, was found to remain stable also at 90 degrees C with respect to exchange processes. The flexible second shell contains, in average, approximately 27 water ligands. To fully characterize the hydration structure, several other parameters such as radial and angular distribution functions (RDF and ADF) and tilt- and theta-angle distributions were evaluated and compared to data obtained at 298 K (25 degrees C). Temperature effects on the dynamics of the Zn(II)-water complex were studied in terms of water reorientations, mean ligand residence times (MRTs), and number of ligand exchange processes. To get further insight into the solute dynamics, additional data, in particular, librational and vibrational motions of water ligands and Zn-O stretching frequencies, were calculated. The second shell is considerably influenced by the elevated temperature, as the ligands' mean residence time is shortened to 4 ps from the value of 10.5 observed at room temperature. The values of the QM/MM MD simulation were also compared to the results of a classical molecular dynamics (CMD) simulation with two- plus three-body potential performed at 90 degrees C, revealing that an accurate description of the second shell and the dynamics of the Zn(II) hydrate needs the inclusion of quantum mechanics in the description.
    [Abstract] [Full Text] [Related] [New Search]