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  • Title: Atoms-in-molecules analysis of extended hypervalent five-center, six-electron (5c-6e) C(2)Z(2)O interactions at the 1,8,9-positions of anthraquinone and 9-methoxyanthracene systems.
    Author: Nakanishi W, Nakamoto T, Hayashi S, Sasamori T, Tokitoh N.
    Journal: Chemistry; 2007; 13(1):255-68. PubMed ID: 17066493.
    Abstract:
    To clarify the nature of five-center, six-electron (5c-6e) C(2)Z(2)O interactions, atoms-in-molecules (AIM) analysis has been applied to an anthraquinone, 1,8-(MeZ)(2)ATQ (1 (Z=Se), 2 (Z=S), and 3 (Z=O)), and a 9-methoxyanthracene system, 9-MeO-1,8-(MeZ)(2)ATC (4 (Z=Se), 5 (Z=S), and 6 (Z=O)), as well as 1-(MeZ)ATQ (7 (Z=Se), 8 (Z=S), and 9 (Z=O)) and 9-MeO-1-(MeZ)ATC (10 (Z=Se), 11 (Z=S), and 12 (Z=O)). The total electronic energy density (H(b)(r(c))) at the bond critical points (BCPs), an appropriate index for weak interactions, has been examined for 5c-6e C(2)Z(2)O and 3c-4e CZO interactions of the n(p)(O)sigma*(Z--C) type in 1-12. Some hydrogen-bonded adducts were also re-examined for convenience of comparison. The total electronic energy densities varied in the following order: OO (3: H(b)(r(c))=0.0028 au)=OO (6: 0.0028 au)>OO (9: 0.0025 au)> or =NNHF (0.0024 au)> or =OO (12: 0.0023 au)>>H(2)OHOH (0.0015 au)>SO (8: 0.0013 au)=SO (2: 0.0013 au)> or =SO (11: 0.0012 au)=SO (5: 0.0012 au)>HFHF (0.0008 au)=SeO (10: 0.0008 au)=SeO (4: 0.0008 au)> or =SeO (1: 0.0007 au)> or =SeO (7: 0.0006 au)>>HCNHF (-0.0013 au). H(b)(r(c)) values for SO were predicted to be smaller than the hydrogen bond of H(2)OHOH and H(b)(r(c)) values for SeO are very close to or slightly smaller than that for HFHF in both the ATQ and 9-MeOATC systems. In the case of Z=Se and S, H(b)(r(c)) values for 5c-6e C(2)Z(2)O interactions are essentially equal to those for 3c-4e CZO if Z is the same. The results demonstrate that two n(p)(O)sigma*(Z--C) 3c-4e interactions effectively connect through the central n(p)(O) orbital to form the extended hypervalent 5c-6e system of the sigma*(C--Z)n(p)(O)sigma*(Z--C) type for Z=Se and S in both systems. Natural bond orbital (NBO) analysis revealed that n(s)(O) also contributes to some extent. The electron charge densities at the BCPs, NBO analysis, and the total energies calculated for 1-12, together with the structural changes in the PhSe derivatives, support the above discussion.
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