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  • Title: Gepard: a rapid and sensitive tool for creating dotplots on genome scale.
    Author: Krumsiek J, Arnold R, Rattei T.
    Journal: Bioinformatics; 2007 Apr 15; 23(8):1026-8. PubMed ID: 17309896.
    Abstract:
    UNLABELLED: Gepard provides a user-friendly, interactive application for the quick creation of dotplots. It utilizes suffix arrays to reduce the time complexity of dotplot calculation to Theta(m*log n). A client-server mode, which is a novel feature for dotplot creation software, allows the user to calculate dotplots and color them by functional annotation without any prior downloading of sequence or annotation data. AVAILABILITY: Both source codes and executable binaries are available at http://mips.gsf.de/services/analysis/gepard
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