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  • Title: Tree Gibbs Sampler: identifying conserved motifs without aligning orthologous sequences.
    Author: Cai X, Hu H, Li XS.
    Journal: Bioinformatics; 2007 Aug 01; 23(15):2013-4. PubMed ID: 17540681.
    Abstract:
    SUMMARY: Tree Gibbs Sampler is a software for identifying motifs by simultaneously using the motif overrepresentation property and the motif evolutionary conservation property. It identifies motifs without depending on pre-aligned orthologous sequences, which makes it useful for the extraction of regulatory elements in multiple genomes of both closely related and distant species. AVAILABILITY: The Tree Gibbs Sampler software is freely downloadable at https://compbio.iupui.edu/xiaomanli/LiSoftware/retrieve.php?ID=tgs
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