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  • Title: Extending KNIME for next-generation sequencing data analysis.
    Author: Jagla B, Wiswedel B, Coppée JY.
    Journal: Bioinformatics; 2011 Oct 15; 27(20):2907-9. PubMed ID: 21873641.
    Abstract:
    SUMMARY: KNIME (Konstanz Information Miner) is a user-friendly and comprehensive open-source data integration, processing, analysis and exploration platform. We present here new functionality and workflows that open the door to performing next-generation sequencing analysis using the KNIME framework. AVAILABILITY: All sources and compiled code are available via the KNIME update mechanism. Example workflows and descriptions are available through http://tech.knime.org/community/next-generation-sequencing. CONTACT: bernd.jagla@pasteur.fr SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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