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  • Title: NOA: a cytoscape plugin for network ontology analysis.
    Author: Zhang C, Wang J, Hanspers K, Xu D, Chen L, Pico AR.
    Journal: Bioinformatics; 2013 Aug 15; 29(16):2066-7. PubMed ID: 23749961.
    Abstract:
    SUMMARY: The Network Ontology Analysis (NOA) plugin for Cytoscape implements the NOA algorithm for network-based enrichment analysis, which extends Gene Ontology annotations to network links, or edges. The plugin facilitates the annotation and analysis of one or more networks in Cytoscape according to user-defined parameters. In addition to tables, the NOA plugin also presents results in the form of heatmaps and overview networks in Cytoscape, which can be exported for publication figures. AVAILABILITY: The NOA plugin is an open source, Java program for Cytoscape version 2.8 available via the Cytoscape App Store (http://apps.cytoscape.org/apps/noa) and plugin manager. A detailed user manual is available at http://nrnb.org/tools/noa. .ucsf.edu
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