These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


Pubmed for Handhelds

PUBMED FOR HANDHELDS

Search MEDLINE/PubMed

  • Title: Software tools for motif and pattern scanning: program descriptions including a universal sequence reading algorithm.
    Author: Cockwell KY, Giles IG.
    Journal: Comput Appl Biosci; 1989 Jul; 5(3):227-32. PubMed ID: 2766008.
    Abstract:
    Two programs, MOTIF and PATTERN, that scan sequences for matches to user-defined motifs and patterns of motifs based on identity and set membership are described. The programs use a simple and logical notation to define motifs, and may be used either interactively or by using command line parameters (suitable for batch processing). The two programs described also incorporate a simple, yet reliable, algorithm that automatically detects in which of six possible formats the sequence entry is written.
    [Abstract] [Full Text] [Related] [New Search]