These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


Pubmed for Handhelds

PUBMED FOR HANDHELDS

Search MEDLINE/PubMed

  • Title: A Cytoscape app for motif enumeration with ISMAGS.
    Author: Van Parys T, Melckenbeeck I, Houbraken M, Audenaert P, Colle D, Pickavet M, Demeester P, Van de Peer Y.
    Journal: Bioinformatics; 2017 Feb 01; 33(3):461-463. PubMed ID: 28158465.
    Abstract:
    SUMMARY: We present a Cytoscape app for the ISMAGS algorithm, which can enumerate all instances of a motif in a graph, making optimal use of the motif’s symmetries to make the search more efficient. The Cytoscape app provides a handy interface for this algorithm, which allows more efficient network analysis. AVAILABILITY AND IMPLEMENTATION: The Cytoscape app for ISMAGS can be freely downloaded from the Cytoscape App store http://apps.cytoscape.org/apps/ismags. Source code and documentation for ISMAGS are available at https://github.com/biointec/ismags. Source code and documentation for the Cytoscape app are available at https://gitlab.psb.ugent.be/thpar/ISMAGS_Cytoscape. CONTACTS: Pieter.Audenaert@intec.ugent.be or Yves.VanDePeer@psb.vib-ugent.be SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
    [Abstract] [Full Text] [Related] [New Search]