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  • Title: A fast, sensitive pattern-matching approach for protein sequences.
    Author: Rohde K, Bork P.
    Journal: Comput Appl Biosci; 1993 Apr; 9(2):183-9. PubMed ID: 8481821.
    Abstract:
    Pattern-matching algorithms are a powerful tool for finding similarities and relationships among the steadily growing amount of known protein sequences. We present a fast, sensitive pattern-matching algorithm that describes a pattern by its physico-chemical properties rather than by occurrence of amino acids, using a fast, dynamic programming algorithm. Selected examples will demonstrate applications and advantages of our approach.
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