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Journal Abstract Search

434 related items for PubMed ID: 10026298

  • 1. The thermodynamics of polyamide-DNA recognition: hairpin polyamide binding in the minor groove of duplex DNA.
    Pilch DS, Poklar N, Baird EE, Dervan PB, Breslauer KJ.
    Biochemistry; 1999 Feb 16; 38(7):2143-51. PubMed ID: 10026298
    [Abstract] [Full Text] [Related]

  • 2. Effects of the A.T/T.A degeneracy of pyrrole--imidazole polyamide recognition in the minor groove of DNA.
    White S, Baird EE, Dervan PB.
    Biochemistry; 1996 Sep 24; 35(38):12532-7. PubMed ID: 8823190
    [Abstract] [Full Text] [Related]

  • 3. Discrimination of hairpin polyamides with an alpha-substituted-gamma-aminobutyric acid as a 5'-TG-3' reader in DNA minor groove.
    Zhang W, Bando T, Sugiyama H.
    J Am Chem Soc; 2006 Jul 12; 128(27):8766-76. PubMed ID: 16819870
    [Abstract] [Full Text] [Related]

  • 4. Binding of a hairpin polyamide in the minor groove of DNA: sequence-specific enthalpic discrimination.
    Pilch DS, Poklar N, Gelfand CA, Law SM, Breslauer KJ, Baird EE, Dervan PB.
    Proc Natl Acad Sci U S A; 1996 Aug 06; 93(16):8306-11. PubMed ID: 8710866
    [Abstract] [Full Text] [Related]

  • 5. Combinatorial determination of sequence specificity for nanomolar DNA-binding hairpin polyamides.
    Vashisht Gopal YN, Van Dyke MW.
    Biochemistry; 2003 Jun 10; 42(22):6891-903. PubMed ID: 12779344
    [Abstract] [Full Text] [Related]

  • 6. Molecular recognition of DNA base pairs by the formamido/pyrrole and formamido/imidazole pairings in stacked polyamides.
    Buchmueller KL, Staples AM, Uthe PB, Howard CM, Pacheco KA, Cox KK, Henry JA, Bailey SL, Horick SM, Nguyen B, Wilson WD, Lee M.
    Nucleic Acids Res; 2005 Jun 10; 33(3):912-21. PubMed ID: 15703305
    [Abstract] [Full Text] [Related]

  • 7. Targeting the inverted CCAAT box 2 in the topoisomerase IIalpha promoter by JH-37, an imidazole-pyrrole polyamide hairpin: design, synthesis, molecular biology, and biophysical studies.
    Henry JA, Le NM, Nguyen B, Howard CM, Bailey SL, Horick SM, Buchmueller KL, Kotecha M, Hochhauser D, Hartley JA, Wilson WD, Lee M.
    Biochemistry; 2004 Sep 28; 43(38):12249-57. PubMed ID: 15379563
    [Abstract] [Full Text] [Related]

  • 8. Effect of single pyrrole replacement with β-alanine on DNA binding affinity and sequence specificity of hairpin pyrrole/imidazole polyamides targeting 5'-GCGC-3'.
    Han YW, Kashiwazaki G, Morinaga H, Matsumoto T, Hashiya K, Bando T, Harada Y, Sugiyama H.
    Bioorg Med Chem; 2013 Sep 01; 21(17):5436-41. PubMed ID: 23810670
    [Abstract] [Full Text] [Related]

  • 9. Sequence specific fluorescence detection of double strand DNA.
    Rucker VC, Foister S, Melander C, Dervan PB.
    J Am Chem Soc; 2003 Feb 05; 125(5):1195-202. PubMed ID: 12553822
    [Abstract] [Full Text] [Related]

  • 10. DNA minor-groove recognition by 3-methylthiophene/pyrrole pair.
    Doss RM, Marques MA, Foister S, Dervan PB.
    Chem Biodivers; 2004 Jun 05; 1(6):886-99. PubMed ID: 17191889
    [Abstract] [Full Text] [Related]

  • 11. Effects of the N-terminal acylamido group of imidazole- and pyrrole-containing polyamides on DNA sequence specificity and binding affinity.
    Westrate L, Mackay H, Brown T, Nguyen B, Kluza J, Wilson WD, Lee M, Hartley JA.
    Biochemistry; 2009 Jun 23; 48(24):5679-88. PubMed ID: 19419200
    [Abstract] [Full Text] [Related]

  • 12. Base pair recognition of the stereochemically alpha-substituted gamma-turn of pyrrole/imidazole hairpin polyamides.
    Zhang W, Minoshima M, Sugiyama H.
    J Am Chem Soc; 2006 Nov 22; 128(46):14905-12. PubMed ID: 17105301
    [Abstract] [Full Text] [Related]

  • 13. Extending the language of DNA molecular recognition by polyamides: unexpected influence of imidazole and pyrrole arrangement on binding affinity and specificity.
    Buchmueller KL, Staples AM, Howard CM, Horick SM, Uthe PB, Le NM, Cox KK, Nguyen B, Pacheco KA, Wilson WD, Lee M.
    J Am Chem Soc; 2005 Jan 19; 127(2):742-50. PubMed ID: 15643900
    [Abstract] [Full Text] [Related]

  • 14. Physical and structural basis for the strong interactions of the -ImPy- central pairing motif in the polyamide f-ImPyIm.
    Buchmueller KL, Bailey SL, Matthews DA, Taherbhai ZT, Register JK, Davis ZS, Bruce CD, O'Hare C, Hartley JA, Lee M.
    Biochemistry; 2006 Nov 14; 45(45):13551-65. PubMed ID: 17087509
    [Abstract] [Full Text] [Related]

  • 15. Recognition of the four Watson-Crick base pairs in the DNA minor groove by synthetic ligands.
    White S, Szewczyk JW, Turner JM, Baird EE, Dervan PB.
    Nature; 1998 Jan 29; 391(6666):468-71. PubMed ID: 9461213
    [Abstract] [Full Text] [Related]

  • 16. Pharmacokinetics of pyrrole-imidazole polyamides after intravenous administration in rat.
    Fukasawa A, Aoyama T, Nagashima T, Fukuda N, Ueno T, Sugiyama H, Nagase H, Matsumoto Y.
    Biopharm Drug Dispos; 2009 Mar 29; 30(2):81-9. PubMed ID: 19226654
    [Abstract] [Full Text] [Related]

  • 17. Minor groove DNA-protein contacts upstream of a tRNA gene detected with a synthetic DNA binding ligand.
    McBryant SJ, Baird EE, Trauger JW, Dervan PB, Gottesfeld JM.
    J Mol Biol; 1999 Mar 05; 286(4):973-81. PubMed ID: 10047474
    [Abstract] [Full Text] [Related]

  • 18. Structural effects of DNA sequence on T.A recognition by hydroxypyrrole/pyrrole pairs in the minor groove.
    Kielkopf CL, Bremer RE, White S, Szewczyk JW, Turner JM, Baird EE, Dervan PB, Rees DC.
    J Mol Biol; 2000 Jan 21; 295(3):557-67. PubMed ID: 10623546
    [Abstract] [Full Text] [Related]

  • 19. Effects of a hairpin polyamide on DNA melting: comparison with distamycin and Hoechst 33258.
    James PL, Le Strat L, Ellervik U, Bratwall C, Nordén B, Brown T, Fox KR.
    Biophys Chem; 2004 Nov 01; 111(3):205-12. PubMed ID: 15501563
    [Abstract] [Full Text] [Related]

  • 20. Molecular design of a pyrrole-imidazole hairpin polyamides for effective DNA alkylation.
    Bando T, Narita A, Saito I, Sugiyama H.
    Chemistry; 2002 Oct 18; 8(20):4781-90. PubMed ID: 12561118
    [Abstract] [Full Text] [Related]

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