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332 related items for PubMed ID: 10047483
1. Modeling high-resolution hydration patterns in correlation with DNA sequence and conformation. Feig M, Pettitt BM. J Mol Biol; 1999 Mar 05; 286(4):1075-95. PubMed ID: 10047483 [Abstract] [Full Text] [Related]
2. A molecular simulation picture of DNA hydration around A- and B-DNA. Feig M, Pettitt BM. Biopolymers; 1998 Mar 05; 48(4):199-209. PubMed ID: 10699840 [Abstract] [Full Text] [Related]
3. Water and ion binding around RNA and DNA (C,G) oligomers. Auffinger P, Westhof E. J Mol Biol; 2000 Jul 28; 300(5):1113-31. PubMed ID: 10903858 [Abstract] [Full Text] [Related]
4. Water and ion binding around r(UpA)12 and d(TpA)12 oligomers--comparison with RNA and DNA (CpG)12 duplexes. Auffinger P, Westhof E. J Mol Biol; 2001 Feb 02; 305(5):1057-72. PubMed ID: 11162114 [Abstract] [Full Text] [Related]
5. Water molecules in DNA recognition II: a molecular dynamics view of the structure and hydration of the trp operator. Bonvin AM, Sunnerhagen M, Otting G, van Gunsteren WF. J Mol Biol; 1998 Oct 02; 282(4):859-73. PubMed ID: 9743632 [Abstract] [Full Text] [Related]
6. Structure of the hydration shells of oligo(dA-dT).oligo(dA-dT) and oligo(dA).oligo(dT) tracts in B-type conformation on the basis of Monte Carlo calculations. Eisenhaber F, Tumanyan VG, Abagyan RA. Biopolymers; 1990 Oct 02; 30(5-6):563-81. PubMed ID: 2265229 [Abstract] [Full Text] [Related]
7. DNA structure: what's in charge? McConnell KJ, Beveridge DL. J Mol Biol; 2000 Dec 15; 304(5):803-20. PubMed ID: 11124028 [Abstract] [Full Text] [Related]
8. Structure, dynamics and hydration of the nogalamycin-d(ATGCAT)2Complex determined by NMR and molecular dynamics simulations in solution. Williams HE, Searle MS. J Mol Biol; 1999 Jul 16; 290(3):699-716. PubMed ID: 10395824 [Abstract] [Full Text] [Related]
9. Molecular dynamics simulations of B '-DNA: sequence effects on A-tract-induced bending and flexibility. McConnell KJ, Beveridge DL. J Mol Biol; 2001 Nov 16; 314(1):23-40. PubMed ID: 11724529 [Abstract] [Full Text] [Related]
10. Simulations of structure and vibrational spectra of deoxyoctanucleotides. Bour P, Andrushchenko V, Kabelác M, Maharaj V, Wieser H. J Phys Chem B; 2005 Nov 03; 109(43):20579-87. PubMed ID: 16853664 [Abstract] [Full Text] [Related]
11. Hydration patterns and intermolecular interactions in A-DNA crystal structures. Implications for DNA recognition. Eisenstein M, Shakked Z. J Mol Biol; 1995 May 05; 248(3):662-78. PubMed ID: 7752232 [Abstract] [Full Text] [Related]
12. Determination of the residence time of water molecules hydrating B'- DNA and B-DNA, by one-dimensional zero-enhancement nuclear Overhauser effect spectroscopy. Phan AT, Leroy JL, Guéron M. J Mol Biol; 1999 Feb 19; 286(2):505-19. PubMed ID: 9973567 [Abstract] [Full Text] [Related]
13. The B-DNA dodecamer at high resolution reveals a spine of water on sodium. Shui X, McFail-Isom L, Hu GG, Williams LD. Biochemistry; 1998 Jun 09; 37(23):8341-55. PubMed ID: 9622486 [Abstract] [Full Text] [Related]
14. The crystal structure of C-C-A-T-T-A-A-T-G-G. Implications for bending of B-DNA at T-A steps. Goodsell DS, Kaczor-Grzeskowiak M, Dickerson RE. J Mol Biol; 1994 May 27; 239(1):79-96. PubMed ID: 8196049 [Abstract] [Full Text] [Related]
15. Structure of the potassium form of CGCGAATTCGCG: DNA deformation by electrostatic collapse around inorganic cations. Shui X, Sines CC, McFail-Isom L, VanDerveer D, Williams LD. Biochemistry; 1998 Dec 01; 37(48):16877-87. PubMed ID: 9836580 [Abstract] [Full Text] [Related]
16. X-ray crystallographic analysis of the hydration of A- and B-form DNA at atomic resolution. Egli M, Tereshko V, Teplova M, Minasov G, Joachimiak A, Sanishvili R, Weeks CM, Miller R, Maier MA, An H, Dan Cook P, Manoharan M. Biopolymers; 1998 Dec 01; 48(4):234-52. PubMed ID: 10699842 [Abstract] [Full Text] [Related]
17. Crystal and molecular structure of d(CGTAGATCTACG) at 2.25 A resolution. Leonard GA, Hunter WN. J Mol Biol; 1993 Nov 05; 234(1):198-208. PubMed ID: 8230199 [Abstract] [Full Text] [Related]
18. A-Tract bending: insights into experimental structures by computational models. Strahs D, Schlick T. J Mol Biol; 2000 Aug 18; 301(3):643-63. PubMed ID: 10966775 [Abstract] [Full Text] [Related]
19. Absence of minor groove monovalent cations in the crosslinked dodecamer C-G-C-G-A-A-T-T-C-G-C-G. Chiu TK, Kaczor-Grzeskowiak M, Dickerson RE. J Mol Biol; 1999 Sep 24; 292(3):589-608. PubMed ID: 10497024 [Abstract] [Full Text] [Related]
20. Comparison of DNA hydration patterns obtained using two distinct computational methods, molecular dynamics simulation and three-dimensional reference interaction site model theory. Yonetani Y, Maruyama Y, Hirata F, Kono H. J Chem Phys; 2008 May 14; 128(18):185102. PubMed ID: 18532849 [Abstract] [Full Text] [Related] Page: [Next] [New Search]