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Journal Abstract Search

154 related items for PubMed ID: 10082374

  • 1. Selecting near-native conformations in homology modeling: the role of molecular mechanics and solvation terms.
    Janardhan A, Vajda S.
    Protein Sci; 1998 Aug; 7(8):1772-80. PubMed ID: 10082374
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  • 3. Discrimination of near-native protein structures from misfolded models by empirical free energy functions.
    Gatchell DW, Dennis S, Vajda S.
    Proteins; 2000 Dec 01; 41(4):518-34. PubMed ID: 11056039
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  • 4. Homology modeling of histidine-containing phosphocarrier protein and eosinophil-derived neurotoxin: construction of models and comparison with experiment.
    Church WB, Palmer A, Wathey JC, Kitson DH.
    Proteins; 1995 Nov 01; 23(3):422-30. PubMed ID: 8710835
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  • 6. Confronting the problem of interconnected structural changes in the comparative modeling of proteins.
    Samudrala R, Pedersen JT, Zhou HB, Luo R, Fidelis K, Moult J.
    Proteins; 1995 Nov 01; 23(3):327-36. PubMed ID: 8710826
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  • 9. Empirical solvation models in the context of conformational energy searches: application to bovine pancreatic trypsin inhibitor.
    Williams RL, Vila J, Perrot G, Scheraga HA.
    Proteins; 1992 Sep 01; 14(1):110-9. PubMed ID: 1384032
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  • 11. Evaluation of the conformational free energies of loops in proteins.
    Smith KC, Honig B.
    Proteins; 1994 Feb 01; 18(2):119-32. PubMed ID: 8159662
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  • 12. Solvation parameters for predicting the structure of surface loops in proteins: transferability and entropic effects.
    Das B, Meirovitch H.
    Proteins; 2003 May 15; 51(3):470-83. PubMed ID: 12696057
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  • 14. Structural mining: self-consistent design on flexible protein-peptide docking and transferable binding affinity potential.
    Liu Z, Dominy BN, Shakhnovich EI.
    J Am Chem Soc; 2004 Jul 14; 126(27):8515-28. PubMed ID: 15238009
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  • 20. Exhaustive mutagenesis in silico: multicoordinate free energy calculations on proteins and peptides.
    Pitera JW, Kollman PA.
    Proteins; 2000 Nov 15; 41(3):385-97. PubMed ID: 11025549
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