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Journal Abstract Search

173 related items for PubMed ID: 10226504

  • 1. Molecular simulation of the effects of alcohols on peptide structure.
    Dwyer DS.
    Biopolymers; 1999 Jun; 49(7):635-45. PubMed ID: 10226504
    [Abstract] [Full Text] [Related]

  • 2. Molecular dynamics simulations of peptides and proteins with a continuum electrostatic model based on screened Coulomb potentials.
    Hassan SA, Mehler EL, Zhang D, Weinstein H.
    Proteins; 2003 Apr 01; 51(1):109-25. PubMed ID: 12596268
    [Abstract] [Full Text] [Related]

  • 3. Molecular dynamics simulations of small peptides: dependence on dielectric model and pH.
    Daggett V, Kollman PA, Kuntz ID.
    Biopolymers; 1991 Feb 15; 31(3):285-304. PubMed ID: 1868159
    [Abstract] [Full Text] [Related]

  • 4. From protein denaturant to protectant: comparative molecular dynamics study of alcohol/protein interactions.
    Shao Q, Fan Y, Yang L, Gao YQ.
    J Chem Phys; 2012 Mar 21; 136(11):115101. PubMed ID: 22443795
    [Abstract] [Full Text] [Related]

  • 5. Effects of chain length on the aggregation of model polyglutamine peptides: molecular dynamics simulations.
    Marchut AJ, Hall CK.
    Proteins; 2007 Jan 01; 66(1):96-109. PubMed ID: 17068817
    [Abstract] [Full Text] [Related]

  • 6. Molecular dynamics simulations of a beta-hairpin fragment of protein G: balance between side-chain and backbone forces.
    Ma B, Nussinov R.
    J Mol Biol; 2000 Mar 03; 296(4):1091-104. PubMed ID: 10686106
    [Abstract] [Full Text] [Related]

  • 7. Characterization of the denaturation of human alpha-lactalbumin in urea by molecular dynamics simulations.
    Smith LJ, Jones RM, van Gunsteren WF.
    Proteins; 2005 Feb 01; 58(2):439-49. PubMed ID: 15558602
    [Abstract] [Full Text] [Related]

  • 8. The solvent-dependent shift of the amide I band of a fully solvated peptide as a local probe for the solvent composition in the peptide/solvent interface.
    Paschek D, Pühse M, Perez-Goicochea A, Gnanakaran S, García AE, Winter R, Geiger A.
    Chemphyschem; 2008 Dec 22; 9(18):2742-50. PubMed ID: 19035605
    [Abstract] [Full Text] [Related]

  • 9. Dissecting the stability of a beta-hairpin peptide that folds in water: NMR and molecular dynamics analysis of the beta-turn and beta-strand contributions to folding.
    Griffiths-Jones SR, Maynard AJ, Searle MS.
    J Mol Biol; 1999 Oct 08; 292(5):1051-69. PubMed ID: 10512702
    [Abstract] [Full Text] [Related]

  • 10. Monte Carlo simulations of the solution structure of simple alcohols in water-acetonitrile mixtures.
    Nagy PI, Erhardt PW.
    J Phys Chem B; 2005 Mar 31; 109(12):5855-72. PubMed ID: 16851638
    [Abstract] [Full Text] [Related]

  • 11. On the influence of charged side chains on the folding-unfolding equilibrium of beta-peptides: a molecular dynamics simulation study.
    Glättli A, Daura X, Bindschädler P, Jaun B, Mahajan YR, Mathad RI, Rueping M, Seebach D, van Gunsteren WF.
    Chemistry; 2005 Dec 09; 11(24):7276-93. PubMed ID: 16247825
    [Abstract] [Full Text] [Related]

  • 12. Cooperative folding mechanism of a beta-hairpin peptide studied by a multicanonical replica-exchange molecular dynamics simulation.
    Yoda T, Sugita Y, Okamoto Y.
    Proteins; 2007 Mar 01; 66(4):846-59. PubMed ID: 17173285
    [Abstract] [Full Text] [Related]

  • 13. Protein refolding versus aggregation: computer simulations on an intermediate-resolution protein model.
    Smith AV, Hall CK.
    J Mol Biol; 2001 Sep 07; 312(1):187-202. PubMed ID: 11545596
    [Abstract] [Full Text] [Related]

  • 14. Examination of the folding of a short alanine-based helical peptide with salt bridges using molecular dynamics simulation.
    Wang WZ, Lin T, Sun YC.
    J Phys Chem B; 2007 Apr 05; 111(13):3508-14. PubMed ID: 17388513
    [Abstract] [Full Text] [Related]

  • 15. Influence of the environment in the conformation of alpha-helices studied by protein database search and molecular dynamics simulations.
    Olivella M, Deupi X, Govaerts C, Pardo L.
    Biophys J; 2002 Jun 05; 82(6):3207-13. PubMed ID: 12023245
    [Abstract] [Full Text] [Related]

  • 16. The occurrence of C--H...O hydrogen bonds in alpha-helices and helix termini in globular proteins.
    Manikandan K, Ramakumar S.
    Proteins; 2004 Sep 01; 56(4):768-81. PubMed ID: 15281129
    [Abstract] [Full Text] [Related]

  • 17. Correlation between molecular volume and effects of n-alcohols on human neuronal nicotinic acetylcholine receptors expressed in Xenopus oocytes.
    Godden EL, Harris RA, Dunwiddie TV.
    J Pharmacol Exp Ther; 2001 Mar 01; 296(3):716-22. PubMed ID: 11181898
    [Abstract] [Full Text] [Related]

  • 18. Solvent dependence of PII conformation in model alanine peptides.
    Liu Z, Chen K, Ng A, Shi Z, Woody RW, Kallenbach NR.
    J Am Chem Soc; 2004 Nov 24; 126(46):15141-50. PubMed ID: 15548011
    [Abstract] [Full Text] [Related]

  • 19. Molecular dynamics simulation of folding of a short helical peptide with many charged residues.
    Wei CC, Ho MH, Wang WH, Sun YC.
    J Phys Chem B; 2005 Oct 27; 109(42):19980-6. PubMed ID: 16853583
    [Abstract] [Full Text] [Related]

  • 20. Molecular mechanism for the effects of trehalose on beta-hairpin folding revealed by molecular dynamics simulation.
    Liu FF, Dong XY, Sun Y.
    J Mol Graph Model; 2008 Nov 27; 27(4):421-9. PubMed ID: 18778961
    [Abstract] [Full Text] [Related]

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