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Journal Abstract Search

82 related items for PubMed ID: 10438609

  • 1. Retinoic acid receptor: a simulation analysis of retinoic acid binding and the resulting conformational changes.
    Blondel A, Renaud JP, Fischer S, Moras D, Karplus M.
    J Mol Biol; 1999 Aug 06; 291(1):101-15. PubMed ID: 10438609
    [Abstract] [Full Text] [Related]

  • 2. Effects of ligand binding on the association properties and conformation in solution of retinoic acid receptors RXR and RAR.
    Egea PF, Rochel N, Birck C, Vachette P, Timmins PA, Moras D.
    J Mol Biol; 2001 Mar 23; 307(2):557-76. PubMed ID: 11254382
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  • 3. Crystal structure of the RAR-gamma ligand-binding domain bound to all-trans retinoic acid.
    Renaud JP, Rochel N, Ruff M, Vivat V, Chambon P, Gronemeyer H, Moras D.
    Nature; 1995 Dec 14; 378(6558):681-9. PubMed ID: 7501014
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  • 4. Crystal structure of apo-cellular retinoic acid-binding protein type II (R111M) suggests a mechanism of ligand entry.
    Chen X, Tordova M, Gilliland GL, Wang L, Li Y, Yan H, Ji X.
    J Mol Biol; 1998 May 08; 278(3):641-53. PubMed ID: 9600845
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  • 5. Conformational and dynamics changes induced by bile acids binding to chicken liver bile acid binding protein.
    Eberini I, Guerini Rocco A, Ientile AR, Baptista AM, Gianazza E, Tomaselli S, Molinari H, Ragona L.
    Proteins; 2008 Jun 08; 71(4):1889-98. PubMed ID: 18175325
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  • 8. Critical role of the H6-H7 loop in the conformational adaptation of all-trans retinoic acid and synthetic retinoids within the ligand-binding site of RARalpha.
    Mailfait S, Thoreau E, Belaiche D, Formstecher And B Sablonniè P.
    J Mol Endocrinol; 2000 Jun 08; 24(3):353-64. PubMed ID: 10828828
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  • 9. Only subtle protein conformational adaptations are required for ligand binding to thyroid hormone receptors: simulations using a novel multipoint steered molecular dynamics approach.
    Martínez L, Polikarpov I, Skaf MS.
    J Phys Chem B; 2008 Aug 28; 112(34):10741-51. PubMed ID: 18681473
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  • 10. Three-dimensional modeling of and ligand docking to vitamin D receptor ligand binding domain.
    Yamamoto K, Masuno H, Choi M, Nakashima K, Taga T, Ooizumi H, Umesono K, Sicinska W, VanHooke J, DeLuca HF, Yamada S.
    Proc Natl Acad Sci U S A; 2000 Feb 15; 97(4):1467-72. PubMed ID: 10677485
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  • 11. Conformational dynamics of the estrogen receptor alpha: molecular dynamics simulations of the influence of binding site structure on protein dynamics.
    Celik L, Lund JD, Schiøtt B.
    Biochemistry; 2007 Feb 20; 46(7):1743-58. PubMed ID: 17249692
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  • 12. Protein and ligand adaptation in a retinoic acid binding protein.
    Pattanayek R, Newcomer ME.
    Protein Sci; 1999 Oct 20; 8(10):2027-32. PubMed ID: 10548048
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  • 13. The structure of Apo-wild-type cellular retinoic acid binding protein II at 1.4 A and its relationship to ligand binding and nuclear translocation.
    Vaezeslami S, Mathes E, Vasileiou C, Borhan B, Geiger JH.
    J Mol Biol; 2006 Oct 27; 363(3):687-701. PubMed ID: 16979656
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  • 15. Three-dimensional models of histamine H3 receptor antagonist complexes and their pharmacophore.
    Axe FU, Bembenek SD, Szalma S.
    J Mol Graph Model; 2006 May 27; 24(6):456-64. PubMed ID: 16386444
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  • 17. Binding free energies and free energy components from molecular dynamics and Poisson-Boltzmann calculations. Application to amino acid recognition by aspartyl-tRNA synthetase.
    Archontis G, Simonson T, Karplus M.
    J Mol Biol; 2001 Feb 16; 306(2):307-27. PubMed ID: 11237602
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  • 19. Conformational selection in silico: loop latching motions and ligand binding in enzymes.
    Wong S, Jacobson MP.
    Proteins; 2008 Apr 16; 71(1):153-64. PubMed ID: 17932934
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