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Journal Abstract Search


152 related items for PubMed ID: 10450080

  • 1. Early events in the folding of an amphipathic peptide: A multinanosecond molecular dynamics study.
    Chipot C, Maigret B, Pohorille A.
    Proteins; 1999 Sep 01; 36(4):383-99. PubMed ID: 10450080
    [Abstract] [Full Text] [Related]

  • 2. Dissecting the stability of a beta-hairpin peptide that folds in water: NMR and molecular dynamics analysis of the beta-turn and beta-strand contributions to folding.
    Griffiths-Jones SR, Maynard AJ, Searle MS.
    J Mol Biol; 1999 Oct 08; 292(5):1051-69. PubMed ID: 10512702
    [Abstract] [Full Text] [Related]

  • 3. Loop propensity of the sequence YKGQP from staphylococcal nuclease: implications for the folding of nuclease.
    Patel S, Sasidhar YU.
    J Pept Sci; 2007 Oct 08; 13(10):679-92. PubMed ID: 17787022
    [Abstract] [Full Text] [Related]

  • 4. The sequence TGAAKAVALVL from glyceraldehyde-3-phosphate dehydrogenase displays structural ambivalence and interconverts between alpha-helical and beta-hairpin conformations mediated by collapsed conformational states.
    Patel S, Balaji PV, Sasidhar YU.
    J Pept Sci; 2007 May 08; 13(5):314-26. PubMed ID: 17437248
    [Abstract] [Full Text] [Related]

  • 5. Kinetics of peptide folding: computer simulations of SYPFDV and peptide variants in water.
    Mohanty D, Elber R, Thirumalai D, Beglov D, Roux B.
    J Mol Biol; 1997 Sep 26; 272(3):423-42. PubMed ID: 9325101
    [Abstract] [Full Text] [Related]

  • 6. Cooperative folding mechanism of a beta-hairpin peptide studied by a multicanonical replica-exchange molecular dynamics simulation.
    Yoda T, Sugita Y, Okamoto Y.
    Proteins; 2007 Mar 01; 66(4):846-59. PubMed ID: 17173285
    [Abstract] [Full Text] [Related]

  • 7. Kinetics of cytochrome C folding: atomically detailed simulations.
    Cárdenas AE, Elber R.
    Proteins; 2003 May 01; 51(2):245-57. PubMed ID: 12660993
    [Abstract] [Full Text] [Related]

  • 8. Free energy landscape and folding mechanism of a beta-hairpin in explicit water: a replica exchange molecular dynamics study.
    Nguyen PH, Stock G, Mittag E, Hu CK, Li MS.
    Proteins; 2005 Dec 01; 61(4):795-808. PubMed ID: 16240446
    [Abstract] [Full Text] [Related]

  • 9. Conformational features of a hexapeptide model Ac-TGAAKA-NH2 corresponding to a hydrated alpha helical segment from glyceraldehyde 3-phosphate dehydrogenase: implications for the role of turns in helix folding.
    Sasidhar YU, Ramakrishna V.
    Indian J Biochem Biophys; 2000 Feb 01; 37(1):34-44. PubMed ID: 10983411
    [Abstract] [Full Text] [Related]

  • 10. Thermodynamic and kinetic characterization of a beta-hairpin peptide in solution: an extended phase space sampling by molecular dynamics simulations in explicit water.
    Daidone I, Amadei A, Di Nola A.
    Proteins; 2005 May 15; 59(3):510-8. PubMed ID: 15789436
    [Abstract] [Full Text] [Related]

  • 11. Simulation of oligopeptide dynamics and folding. The use of NMR chemical shifts to analyse the MD trajectories.
    Busetta B, Picard P, Précigoux G.
    J Pept Sci; 2006 Jan 15; 12(1):33-42. PubMed ID: 16059968
    [Abstract] [Full Text] [Related]

  • 12. beta-hairpin folding and stability: molecular dynamics simulations of designed peptides in aqueous solution.
    Santiveri CM, Jiménez MA, Rico M, Van Gunsteren WF, Daura X.
    J Pept Sci; 2004 Sep 15; 10(9):546-65. PubMed ID: 15473263
    [Abstract] [Full Text] [Related]

  • 13. Helix nucleation kinetics from molecular simulations in explicit solvent.
    Hummer G, García AE, Garde S.
    Proteins; 2001 Jan 01; 42(1):77-84. PubMed ID: 11093262
    [Abstract] [Full Text] [Related]

  • 14. Molecular dynamics simulations of polypeptide conformations in water: A comparison of alpha, beta, and poly(pro)II conformations.
    Sreerama N, Woody RW.
    Proteins; 1999 Sep 01; 36(4):400-6. PubMed ID: 10450081
    [Abstract] [Full Text] [Related]

  • 15. Folding and translocation of the undecamer of poly-L-leucine across the water-hexane interface. A molecular dynamics study.
    Chipot C, Pohorille A.
    J Am Chem Soc; 1998 Nov 25; 120(46):11912-24. PubMed ID: 11542762
    [Abstract] [Full Text] [Related]

  • 16. beta-Hairpins, alpha-helices, and the intermediates among the secondary structures in the energy landscape of a peptide from a distal beta-hairpin of SH3 domain.
    Ikeda K, Galzitskaya OV, Nakamura H, Higo J.
    J Comput Chem; 2003 Feb 25; 24(3):310-8. PubMed ID: 12548722
    [Abstract] [Full Text] [Related]

  • 17. Molecular dynamics simulations of a beta-hairpin fragment of protein G: balance between side-chain and backbone forces.
    Ma B, Nussinov R.
    J Mol Biol; 2000 Mar 03; 296(4):1091-104. PubMed ID: 10686106
    [Abstract] [Full Text] [Related]

  • 18. Folding is not required for bilayer insertion: replica exchange simulations of an alpha-helical peptide with an explicit lipid bilayer.
    Nymeyer H, Woolf TB, Garcia AE.
    Proteins; 2005 Jun 01; 59(4):783-90. PubMed ID: 15828005
    [Abstract] [Full Text] [Related]

  • 19. Folding of alpha(r)beta and epsilonbeta reverse turns; a nanosecond molecular dynamics simulation of the hexapeptide MSALNT and the octapeptide NMSALNTL in water.
    Santa H, Peräkylä M, Laatikainen R.
    J Biomol Struct Dyn; 1999 Apr 01; 16(5):1033-41. PubMed ID: 10333173
    [Abstract] [Full Text] [Related]

  • 20. Conformational equilibrium in alanine-rich peptides probed by reversible stretching simulations.
    Hénin J, Schulten K, Chipot C.
    J Phys Chem B; 2006 Aug 24; 110(33):16718-23. PubMed ID: 16913811
    [Abstract] [Full Text] [Related]


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