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173 related items for PubMed ID: 10563823

  • 1. Isolation and characterization of thermodynamically stable and unstable RNA hairpins from a triloop combinatorial library.
    Shu Z, Bevilacqua PC.
    Biochemistry; 1999 Nov 16; 38(46):15369-79. PubMed ID: 10563823
    [Abstract] [Full Text] [Related]

  • 2. Selection for thermodynamically stable DNA tetraloops using temperature gradient gel electrophoresis reveals four motifs: d(cGNNAg), d(cGNABg),d(cCNNGg), and d(gCNNGc).
    Nakano M, Moody EM, Liang J, Bevilacqua PC.
    Biochemistry; 2002 Dec 03; 41(48):14281-92. PubMed ID: 12450393
    [Abstract] [Full Text] [Related]

  • 3. Stability of RNA hairpins closed by wobble base pairs.
    Giese MR, Betschart K, Dale T, Riley CK, Rowan C, Sprouse KJ, Serra MJ.
    Biochemistry; 1998 Jan 27; 37(4):1094-100. PubMed ID: 9454601
    [Abstract] [Full Text] [Related]

  • 4. Thermodynamic analysis of an RNA combinatorial library contained in a short hairpin.
    Bevilacqua JM, Bevilacqua PC.
    Biochemistry; 1998 Nov 10; 37(45):15877-84. PubMed ID: 9843393
    [Abstract] [Full Text] [Related]

  • 5. Isolation and characterization of a family of stable RNA tetraloops with the motif YNMG that participate in tertiary interactions.
    Proctor DJ, Schaak JE, Bevilacqua JM, Falzone CJ, Bevilacqua PC.
    Biochemistry; 2002 Oct 08; 41(40):12062-75. PubMed ID: 12356306
    [Abstract] [Full Text] [Related]

  • 6. Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops.
    Antao VP, Tinoco I.
    Nucleic Acids Res; 1992 Feb 25; 20(4):819-24. PubMed ID: 1371866
    [Abstract] [Full Text] [Related]

  • 7. Melting studies of short DNA hairpins: influence of loop sequence and adjoining base pair identity on hairpin thermodynamic stability.
    Vallone PM, Paner TM, Hilario J, Lane MJ, Faldasz BD, Benight AS.
    Biopolymers; 1999 Oct 05; 50(4):425-42. PubMed ID: 10423551
    [Abstract] [Full Text] [Related]

  • 8. RNA hairpin loop stability depends on closing base pair.
    Serra MJ, Lyttle MH, Axenson TJ, Schadt CA, Turner DH.
    Nucleic Acids Res; 1993 Aug 11; 21(16):3845-9. PubMed ID: 7690127
    [Abstract] [Full Text] [Related]

  • 9. High-throughput thermal stability assessment of DNA hairpins based on high resolution melting.
    Wang J, Dong P, Wu W, Pan X, Liang X.
    J Biomol Struct Dyn; 2018 Jan 11; 36(1):1-13. PubMed ID: 28024437
    [Abstract] [Full Text] [Related]

  • 10. Sequence dependence of the stability of RNA hairpin molecules with six nucleotide loops.
    Vecenie CJ, Morrow CV, Zyra A, Serra MJ.
    Biochemistry; 2006 Feb 07; 45(5):1400-7. PubMed ID: 16445282
    [Abstract] [Full Text] [Related]

  • 11. Effects of osmolytes and macromolecular crowders on stable GAAA tetraloops and their preference for a CG closing base pair.
    Leonard KN, Blose JM.
    PeerJ; 2018 Feb 07; 6():e4236. PubMed ID: 29456882
    [Abstract] [Full Text] [Related]

  • 12. A model for the stabilities of RNA hairpins based on a study of the sequence dependence of stability for hairpins of six nucleotides.
    Serra MJ, Axenson TJ, Turner DH.
    Biochemistry; 1994 Nov 29; 33(47):14289-96. PubMed ID: 7524674
    [Abstract] [Full Text] [Related]

  • 13. Parallel-stranded DNA with mixed AT/GC composition: role of trans G.C base pairs in sequence dependent helical stability.
    Shchyolkina AK, Borisova OF, Livshits MA, Pozmogova GE, Chernov BK, Klement R, Jovin TM.
    Biochemistry; 2000 Aug 22; 39(33):10034-44. PubMed ID: 10955991
    [Abstract] [Full Text] [Related]

  • 14. Structural and thermodynamic signatures that define pseudotriloop RNA hairpins.
    van der Werf R, Wijmenga SS, Heus HA, Olsthoorn RC.
    RNA; 2013 Dec 22; 19(12):1833-9. PubMed ID: 24158793
    [Abstract] [Full Text] [Related]

  • 15. A thermodynamic study of unusually stable RNA and DNA hairpins.
    Antao VP, Lai SY, Tinoco I.
    Nucleic Acids Res; 1991 Nov 11; 19(21):5901-5. PubMed ID: 1719483
    [Abstract] [Full Text] [Related]

  • 16. Thermodynamic coupling of the loop and stem in unusually stable DNA hairpins closed by CG base pairs.
    Moody EM, Bevilacqua PC.
    J Am Chem Soc; 2003 Feb 26; 125(8):2032-3. PubMed ID: 12590515
    [Abstract] [Full Text] [Related]

  • 17. Effects of osmolytes on stable UUCG tetraloops and their preference for a CG closing base pair.
    Whittum ME, Blose JM.
    Nucleosides Nucleotides Nucleic Acids; 2017 Sep 02; 36(9):583-597. PubMed ID: 29035162
    [Abstract] [Full Text] [Related]

  • 18. Improved parameters for the prediction of RNA hairpin stability.
    Serra MJ, Barnes TW, Betschart K, Gutierrez MJ, Sprouse KJ, Riley CK, Stewart L, Temel RE.
    Biochemistry; 1997 Apr 22; 36(16):4844-51. PubMed ID: 9125504
    [Abstract] [Full Text] [Related]

  • 19. Conformational and thermodynamic effects of naturally occurring base methylations in a ribosomal RNA hairpin of Bacillus stearothermophilus.
    Heus HA, Formenoy LJ, Van Knippenberg PH.
    Eur J Biochem; 1990 Mar 10; 188(2):275-81. PubMed ID: 1690648
    [Abstract] [Full Text] [Related]

  • 20. A test of the model to predict unusually stable RNA hairpin loop stability.
    Dale T, Smith R, Serra MJ.
    RNA; 2000 Apr 10; 6(4):608-15. PubMed ID: 10786851
    [Abstract] [Full Text] [Related]

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