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292 related items for PubMed ID: 10737861

  • 1. Studies of DNA dumbbells VII: evaluation of the next-nearest-neighbor sequence-dependent interactions in duplex DNA.
    Owczarzy R, Vallone PM, Goldstein RF, Benight AS.
    Biopolymers; 1999; 52(1):29-56. PubMed ID: 10737861
    [Abstract] [Full Text] [Related]

  • 2. Studies of DNA dumbbells. I. Melting curves of 17 DNA dumbbells with different duplex stem sequences linked by T4 endloops: evaluation of the nearest-neighbor stacking interactions in DNA.
    Doktycz MJ, Goldstein RF, Paner TM, Gallo FJ, Benight AS.
    Biopolymers; 1992 Jul; 32(7):849-64. PubMed ID: 1391634
    [Abstract] [Full Text] [Related]

  • 3. Studies of DNA dumbbells. III. Theoretical analysis of optical melting curves of dumbbells with a 16 base-pair duplex stem and Tn end loops (n = 2, 3, 4, 6, 8, 10, 14).
    Paner TM, Amaratunga M, Benight AS.
    Biopolymers; 1992 Jul; 32(7):881-92. PubMed ID: 1391636
    [Abstract] [Full Text] [Related]

  • 4. Studies of DNA dumbbells VIII. Melting analysis of DNA dumbbells with dinucleotide repeat stem sequences.
    Mandell KE, Vallone PM, Owczarzy R, Riccelli PV, Benight AS.
    Biopolymers; 2006 Jun 15; 82(3):199-221. PubMed ID: 16345003
    [Abstract] [Full Text] [Related]

  • 5. Melting studies of short DNA hairpins: influence of loop sequence and adjoining base pair identity on hairpin thermodynamic stability.
    Vallone PM, Paner TM, Hilario J, Lane MJ, Faldasz BD, Benight AS.
    Biopolymers; 1999 Oct 05; 50(4):425-42. PubMed ID: 10423551
    [Abstract] [Full Text] [Related]

  • 6. Studies of DNA dumbbells. IV. Preparation and melting of a DNA dumbbell with the 16 base-pair sequence 5'G-T-A-T-C-C-C-T-C-T-G-G-A-T-A-C3' linked on the ends by dodecyl chains.
    Doktycz MJ, Paner TM, Benight AS.
    Biopolymers; 1993 Dec 05; 33(12):1765-77. PubMed ID: 8268405
    [Abstract] [Full Text] [Related]

  • 7. Studies of DNA dumbbells. II. Construction and characterization of DNA dumbbells with a 16 base-pair duplex stem and Tn end loops (n = 2, 3, 4, 6, 8, 10, 14).
    Amaratunga M, Snowden-Ifft E, Wemmer DE, Benight AS.
    Biopolymers; 1992 Jul 05; 32(7):865-79. PubMed ID: 1391635
    [Abstract] [Full Text] [Related]

  • 8. Studies of DNA dumbbells. V. A DNA triplex formed between a 28 base-pair DNA dumbbell substrate and a 16 base linear single strand.
    Paner TM, Gallo FJ, Doktycz MJ, Benight AS.
    Biopolymers; 1993 Dec 05; 33(12):1779-89. PubMed ID: 8268406
    [Abstract] [Full Text] [Related]

  • 9. Studies of DNA dumbbells. VI. Analysis of optical melting curves of dumbbells with a sixteen-base pair duplex stem and end-loops of variable size and sequence.
    Paner TM, Riccelli PV, Owczarzy R, Benight AS.
    Biopolymers; 1996 Dec 05; 39(6):779-93. PubMed ID: 8946800
    [Abstract] [Full Text] [Related]

  • 10. Predicting sequence-dependent melting stability of short duplex DNA oligomers.
    Owczarzy R, Vallone PM, Gallo FJ, Paner TM, Lane MJ, Benight AS.
    Biopolymers; 1997 Dec 05; 44(3):217-39. PubMed ID: 9591477
    [Abstract] [Full Text] [Related]

  • 11. Thermodynamic stability of the 5' dangling-ended DNA hairpins formed from sequences 5'-(XY)2GGATAC(T)4GTATCC-3', where X, Y = A, T, G, C.
    Doktycz MJ, Paner TM, Amaratunga M, Benight AS.
    Biopolymers; 1990 Dec 05; 30(7-8):829-45. PubMed ID: 2275982
    [Abstract] [Full Text] [Related]

  • 12. Effect of base pair A/C and G/T mismatches on the thermal stabilities of DNA oligomers that form B-Z junctions.
    Otokiti EO, Sheardy RD.
    Biochemistry; 1997 Sep 23; 36(38):11419-27. PubMed ID: 9298961
    [Abstract] [Full Text] [Related]

  • 13. Thermodynamic, spectroscopic, and equilibrium binding studies of DNA sequence context effects in six 22-base pair deoxyoligonucleotides.
    Riccelli PV, Vallone PM, Kashin I, Faldasz BD, Lane MJ, Benight AS.
    Biochemistry; 1999 Aug 24; 38(34):11197-208. PubMed ID: 10460177
    [Abstract] [Full Text] [Related]

  • 14. DNA oligonucleotide duplexes containing intramolecular platinated cross-links: energetics, hydration, sequence, and ionic effects.
    Kankia BI, Soto AM, Burns N, Shikiya R, Tung CS, Marky LA.
    Biopolymers; 2002 Nov 05; 65(3):218-27. PubMed ID: 12228927
    [Abstract] [Full Text] [Related]

  • 15. Contribution of loops and nicks to the formation of DNA dumbbells: melting behavior and ligand binding.
    Rentzeperis D, Ho J, Marky LA.
    Biochemistry; 1993 Mar 16; 32(10):2564-72. PubMed ID: 8448114
    [Abstract] [Full Text] [Related]

  • 16. Influence of sequence context and length on the structure and stability of triplet repeat DNA oligomers.
    Paiva AM, Sheardy RD.
    Biochemistry; 2004 Nov 09; 43(44):14218-27. PubMed ID: 15518572
    [Abstract] [Full Text] [Related]

  • 17. Thermodynamic, spectroscopic, and equilibrium binding studies of DNA sequence context effects in four 40 base pair deoxyoligonucleotides.
    Vallone PM, Benight AS.
    Biochemistry; 2000 Jul 04; 39(26):7835-46. PubMed ID: 10869190
    [Abstract] [Full Text] [Related]

  • 18. How many numbers are required to specify sequence-dependent properties of polynucleotides?
    Goldstein RF, Benight AS.
    Biopolymers; 1992 Dec 04; 32(12):1679-93. PubMed ID: 1472651
    [Abstract] [Full Text] [Related]

  • 19. Thermodynamic properties of a conformationally constrained intramolecular DNA triple helix.
    Völker J, Osborne SE, Glick GD, Breslauer KJ.
    Biochemistry; 1997 Jan 28; 36(4):756-67. PubMed ID: 9020773
    [Abstract] [Full Text] [Related]

  • 20. Structures and stabilities of small DNA dumbbells with Watson-Crick and Hoogsteen base pairs.
    Escaja N, Gómez-Pinto I, Rico M, Pedroso E, González C.
    Chembiochem; 2003 Jul 07; 4(7):623-32. PubMed ID: 12851932
    [Abstract] [Full Text] [Related]

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