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3702 related items for PubMed ID: 10903873

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  • 3. Role of main-chain electrostatics, hydrophobic effect and side-chain conformational entropy in determining the secondary structure of proteins.
    Avbelj F, Fele L.
    J Mol Biol; 1998 Jun 12; 279(3):665-84. PubMed ID: 9641985
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  • 4. Free energies of amino acid side-chain rotamers in alpha-helices, beta-sheets and alpha-helix N-caps.
    Stapley BJ, Doig AJ.
    J Mol Biol; 1997 Sep 26; 272(3):456-64. PubMed ID: 9325103
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  • 6. The occurrence of C--H...O hydrogen bonds in alpha-helices and helix termini in globular proteins.
    Manikandan K, Ramakumar S.
    Proteins; 2004 Sep 01; 56(4):768-81. PubMed ID: 15281129
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  • 9. Conformational analysis of endothelin-1: effects of solvation free energy.
    Hempel JC, Fine RM, Hassan M, Ghoul W, Guaragna A, Koerber SC, Li Z, Hagler AT.
    Biopolymers; 1995 Sep 01; 36(3):283-301. PubMed ID: 7669916
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  • 10. Hydration free energies of amino acids: why side chain analog data are not enough.
    König G, Boresch S.
    J Phys Chem B; 2009 Jul 02; 113(26):8967-74. PubMed ID: 19507836
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  • 11. Determination of alpha-helix propensity within the context of a folded protein. Sites 44 and 131 in bacteriophage T4 lysozyme.
    Blaber M, Zhang XJ, Lindstrom JD, Pepiot SD, Baase WA, Matthews BW.
    J Mol Biol; 1994 Jan 14; 235(2):600-24. PubMed ID: 8289284
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  • 12. Alpha-helix stabilization by alanine relative to glycine: roles of polar and apolar solvent exposures and of backbone entropy.
    López-Llano J, Campos LA, Sancho J.
    Proteins; 2006 Aug 15; 64(3):769-78. PubMed ID: 16755589
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  • 13. Solvation free energy of amino acids and side-chain analogues.
    Chang J, Lenhoff AM, Sandler SI.
    J Phys Chem B; 2007 Mar 01; 111(8):2098-106. PubMed ID: 17269814
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  • 14. Sterics and solvation winnow accessible conformational space for unfolded proteins.
    Fitzkee NC, Rose GD.
    J Mol Biol; 2005 Nov 04; 353(4):873-87. PubMed ID: 16185713
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  • 15. Position-dependence of stabilizing polar interactions of asparagine in transmembrane helical bundles.
    Lear JD, Gratkowski H, Adamian L, Liang J, DeGrado WF.
    Biochemistry; 2003 Jun 03; 42(21):6400-7. PubMed ID: 12767221
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  • 16. Atoms-in-molecules study of the genetically encoded amino acids. III. Bond and atomic properties and their correlations with experiment including mutation-induced changes in protein stability and genetic coding.
    Matta CF, Bader RF.
    Proteins; 2003 Aug 15; 52(3):360-99. PubMed ID: 12866050
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  • 18. Thermodynamic model of secondary structure for alpha-helical peptides and proteins.
    Lomize AL, Mosberg HI.
    Biopolymers; 1997 Aug 15; 42(2):239-69. PubMed ID: 9235002
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  • 19. Molecular dynamics simulations of peptides and proteins with a continuum electrostatic model based on screened Coulomb potentials.
    Hassan SA, Mehler EL, Zhang D, Weinstein H.
    Proteins; 2003 Apr 01; 51(1):109-25. PubMed ID: 12596268
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  • 20. A solvent model for simulations of peptides in bilayers. I. Membrane-promoting alpha-helix formation.
    Efremov RG, Nolde DE, Vergoten G, Arseniev AS.
    Biophys J; 1999 May 01; 76(5):2448-59. PubMed ID: 10233062
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