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2935 related items for PubMed ID: 10966778

  • 1. An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.
    Yang AS, Honig B.
    J Mol Biol; 2000 Aug 18; 301(3):691-711. PubMed ID: 10966778
    [Abstract] [Full Text] [Related]

  • 2. An integrated approach to the analysis and modeling of protein sequences and structures. I. Protein structural alignment and a quantitative measure for protein structural distance.
    Yang AS, Honig B.
    J Mol Biol; 2000 Aug 18; 301(3):665-78. PubMed ID: 10966776
    [Abstract] [Full Text] [Related]

  • 3. An integrated approach to the analysis and modeling of protein sequences and structures. II. On the relationship between sequence and structural similarity for proteins that are not obviously related in sequence.
    Yang AS, Honig B.
    J Mol Biol; 2000 Aug 18; 301(3):679-89. PubMed ID: 10966777
    [Abstract] [Full Text] [Related]

  • 4. Alignment and searching for common protein folds using a data bank of structural templates.
    Johnson MS, Overington JP, Blundell TL.
    J Mol Biol; 1993 Jun 05; 231(3):735-52. PubMed ID: 8515448
    [Abstract] [Full Text] [Related]

  • 5. Recognition of analogous and homologous protein folds: analysis of sequence and structure conservation.
    Russell RB, Saqi MA, Sayle RA, Bates PA, Sternberg MJ.
    J Mol Biol; 1997 Jun 13; 269(3):423-39. PubMed ID: 9199410
    [Abstract] [Full Text] [Related]

  • 6. Sequence and structural analysis of cellular retinoic acid-binding proteins reveals a network of conserved hydrophobic interactions.
    Gunasekaran K, Hagler AT, Gierasch LM.
    Proteins; 2004 Feb 01; 54(2):179-94. PubMed ID: 14696180
    [Abstract] [Full Text] [Related]

  • 7.
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  • 8. Multiple protein sequence alignment from tertiary structure comparison: assignment of global and residue confidence levels.
    Russell RB, Barton GJ.
    Proteins; 1992 Oct 01; 14(2):309-23. PubMed ID: 1409577
    [Abstract] [Full Text] [Related]

  • 9. Effective connectivity profile: a structural representation that evidences the relationship between protein structures and sequences.
    Bastolla U, Ortíz AR, Porto M, Teichert F.
    Proteins; 2008 Dec 01; 73(4):872-88. PubMed ID: 18536008
    [Abstract] [Full Text] [Related]

  • 10. Within the twilight zone: a sensitive profile-profile comparison tool based on information theory.
    Yona G, Levitt M.
    J Mol Biol; 2002 Feb 01; 315(5):1257-75. PubMed ID: 11827492
    [Abstract] [Full Text] [Related]

  • 11. The identification of conserved interactions within the SH3 domain by alignment of sequences and structures.
    Larson SM, Davidson AR.
    Protein Sci; 2000 Nov 01; 9(11):2170-80. PubMed ID: 11152127
    [Abstract] [Full Text] [Related]

  • 12. A 3D-1D substitution matrix for protein fold recognition that includes predicted secondary structure of the sequence.
    Rice DW, Eisenberg D.
    J Mol Biol; 1997 Apr 11; 267(4):1026-38. PubMed ID: 9135128
    [Abstract] [Full Text] [Related]

  • 13. Structural features can be unconserved in proteins with similar folds. An analysis of side-chain to side-chain contacts secondary structure and accessibility.
    Russell RB, Barton GJ.
    J Mol Biol; 1994 Dec 02; 244(3):332-50. PubMed ID: 7966343
    [Abstract] [Full Text] [Related]

  • 14. Fast structure alignment for protein databank searching.
    Orengo CA, Brown NP, Taylor WR.
    Proteins; 1992 Oct 02; 14(2):139-67. PubMed ID: 1409565
    [Abstract] [Full Text] [Related]

  • 15. Protein fold recognition by prediction-based threading.
    Rost B, Schneider R, Sander C.
    J Mol Biol; 1997 Jul 18; 270(3):471-80. PubMed ID: 9237912
    [Abstract] [Full Text] [Related]

  • 16. Amino acid pair interchanges at spatially conserved locations.
    Naor D, Fischer D, Jernigan RL, Wolfson HJ, Nussinov R.
    J Mol Biol; 1996 Mar 15; 256(5):924-38. PubMed ID: 8601843
    [Abstract] [Full Text] [Related]

  • 17. Conservation of polyproline II helices in homologous proteins: implications for structure prediction by model building.
    Adzhubei AA, Sternberg MJ.
    Protein Sci; 1994 Dec 15; 3(12):2395-410. PubMed ID: 7756993
    [Abstract] [Full Text] [Related]

  • 18. Prediction of protein structure by evaluation of sequence-structure fitness. Aligning sequences to contact profiles derived from three-dimensional structures.
    Ouzounis C, Sander C, Scharf M, Schneider R.
    J Mol Biol; 1993 Aug 05; 232(3):805-25. PubMed ID: 8355272
    [Abstract] [Full Text] [Related]

  • 19. Distinguishing structural and functional restraints in evolution in order to identify interaction sites.
    Chelliah V, Chen L, Blundell TL, Lovell SC.
    J Mol Biol; 2004 Oct 01; 342(5):1487-504. PubMed ID: 15364576
    [Abstract] [Full Text] [Related]

  • 20. Protein fold recognition by mapping predicted secondary structures.
    Russell RB, Copley RR, Barton GJ.
    J Mol Biol; 1996 Jun 14; 259(3):349-65. PubMed ID: 8676374
    [Abstract] [Full Text] [Related]

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