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290 related items for PubMed ID: 11027137

  • 1. Hypermodified nucleosides in the anticodon of tRNALys stabilize a canonical U-turn structure.
    Sundaram M, Durant PC, Davis DR.
    Biochemistry; 2000 Oct 17; 39(41):12575-84. PubMed ID: 11027137
    [Abstract] [Full Text] [Related]

  • 2. Structural effects of hypermodified nucleosides in the Escherichia coli and human tRNALys anticodon loop: the effect of nucleosides s2U, mcm5U, mcm5s2U, mnm5s2U, t6A, and ms2t6A.
    Durant PC, Bajji AC, Sundaram M, Kumar RK, Davis DR.
    Biochemistry; 2005 Jun 07; 44(22):8078-89. PubMed ID: 15924427
    [Abstract] [Full Text] [Related]

  • 3. Modified nucleoside dependent Watson-Crick and wobble codon binding by tRNALysUUU species.
    Yarian C, Marszalek M, Sochacka E, Malkiewicz A, Guenther R, Miskiewicz A, Agris PF.
    Biochemistry; 2000 Nov 07; 39(44):13390-5. PubMed ID: 11063576
    [Abstract] [Full Text] [Related]

  • 4. Synthesis and characterization of the native anticodon domain of E. coli TRNA(Lys): simultaneous incorporation of modified nucleosides mnm(5)s(2)U, t(6)A, and pseudouridine using phosphoramidite chemistry.
    Sundaram M, Crain PF, Davis DR.
    J Org Chem; 2000 Sep 08; 65(18):5609-14. PubMed ID: 10970299
    [Abstract] [Full Text] [Related]

  • 5. An RNA complex of the HIV-1 A-loop and tRNA(Lys,3) is stabilized by nucleoside modifications.
    Bajji AC, Sundaram M, Myszka DG, Davis DR.
    J Am Chem Soc; 2002 Dec 04; 124(48):14302-3. PubMed ID: 12452693
    [Abstract] [Full Text] [Related]

  • 6. Synthesis of the tRNA(Lys,3) anticodon stem-loop domain containing the hypermodified ms2t6A nucleoside.
    Bajji AC, Davis DR.
    J Org Chem; 2002 Jul 26; 67(15):5352-8. PubMed ID: 12126427
    [Abstract] [Full Text] [Related]

  • 7. Functional anticodon architecture of human tRNALys3 includes disruption of intraloop hydrogen bonding by the naturally occurring amino acid modification, t6A.
    Stuart JW, Gdaniec Z, Guenther R, Marszalek M, Sochacka E, Malkiewicz A, Agris PF.
    Biochemistry; 2000 Nov 07; 39(44):13396-404. PubMed ID: 11063577
    [Abstract] [Full Text] [Related]

  • 8. The role of modifications in codon discrimination by tRNA(Lys)UUU.
    Murphy FV, Ramakrishnan V, Malkiewicz A, Agris PF.
    Nat Struct Mol Biol; 2004 Dec 07; 11(12):1186-91. PubMed ID: 15558052
    [Abstract] [Full Text] [Related]

  • 9. Unconventional structure of tRNA(Lys)SUU anticodon explains tRNA's role in bacterial and mammalian ribosomal frameshifting and primer selection by HIV-1.
    Agris PF, Guenther R, Ingram PC, Basti MM, Stuart JW, Sochacka E, Malkiewicz A.
    RNA; 1997 Apr 07; 3(4):420-8. PubMed ID: 9085848
    [Abstract] [Full Text] [Related]

  • 10. The crystal structure of HIV reverse-transcription primer tRNA(Lys,3) shows a canonical anticodon loop.
    Bénas P, Bec G, Keith G, Marquet R, Ehresmann C, Ehresmann B, Dumas P.
    RNA; 2000 Oct 07; 6(10):1347-55. PubMed ID: 11073212
    [Abstract] [Full Text] [Related]

  • 11. Anticodon domain methylated nucleosides of yeast tRNA(Phe) are significant recognition determinants in the binding of a phage display selected peptide.
    Mucha P, Szyk A, Rekowski P, Weiss PA, Agris PF.
    Biochemistry; 2001 Nov 27; 40(47):14191-9. PubMed ID: 11714272
    [Abstract] [Full Text] [Related]

  • 12. The effect of pseudouridine and pH on the structure and dynamics of the anticodon stem-loop of tRNA(Lys,3).
    Durant PC, Davis DR.
    Nucleic Acids Symp Ser; 1997 Nov 27; (36):56-7. PubMed ID: 9478205
    [Abstract] [Full Text] [Related]

  • 13. Posttranscriptional modifications at the 37th position in the anticodon stem-loop of tRNA: structural insights from MD simulations.
    Seelam Prabhakar P, Takyi NA, Wetmore SD.
    RNA; 2021 Feb 27; 27(2):202-220. PubMed ID: 33214333
    [Abstract] [Full Text] [Related]

  • 14. Structural features of tRNALys favored by anticodon nuclease as inferred from reactivities of anticodon stem and loop substrate analogs.
    Jiang Y, Blanga S, Amitsur M, Meidler R, Krivosheyev E, Sundaram M, Bajji AC, Davis DR, Kaufmann G.
    J Biol Chem; 2002 Feb 08; 277(6):3836-41. PubMed ID: 11723135
    [Abstract] [Full Text] [Related]

  • 15. Metal ion stabilization of the U-turn of the A37 N6-dimethylallyl-modified anticodon stem-loop of Escherichia coli tRNAPhe.
    Cabello-Villegas J, Tworowska I, Nikonowicz EP.
    Biochemistry; 2004 Jan 13; 43(1):55-66. PubMed ID: 14705931
    [Abstract] [Full Text] [Related]

  • 16. Specificity of phage display selected peptides for modified anticodon stem and loop domains of tRNA.
    Eshete M, Marchbank MT, Deutscher SL, Sproat B, Leszczynska G, Malkiewicz A, Agris PF.
    Protein J; 2007 Jan 13; 26(1):61-73. PubMed ID: 17237992
    [Abstract] [Full Text] [Related]

  • 17. Preferences of AAA/AAG codon recognition by modified nucleosides, τm5s2U34 and t6A37 present in tRNALys.
    Sonawane KD, Kamble AS, Fandilolu PM.
    J Biomol Struct Dyn; 2018 Dec 13; 36(16):4182-4196. PubMed ID: 29243556
    [Abstract] [Full Text] [Related]

  • 18. The naturally occurring N6-threonyl adenine in anticodon loop of Schizosaccharomyces pombe tRNAi causes formation of a unique U-turn motif.
    Lescrinier E, Nauwelaerts K, Zanier K, Poesen K, Sattler M, Herdewijn P.
    Nucleic Acids Res; 2006 Dec 13; 34(10):2878-86. PubMed ID: 16738127
    [Abstract] [Full Text] [Related]

  • 19. Naturally-occurring modification restricts the anticodon domain conformational space of tRNA(Phe).
    Stuart JW, Koshlap KM, Guenther R, Agris PF.
    J Mol Biol; 2003 Dec 12; 334(5):901-18. PubMed ID: 14643656
    [Abstract] [Full Text] [Related]

  • 20. Solution conformations of unmodified and A(37)N(6)-dimethylallyl modified anticodon stem-loops of Escherichia coli tRNA(Phe).
    Cabello-Villegas J, Winkler ME, Nikonowicz EP.
    J Mol Biol; 2002 Jun 21; 319(5):1015-34. PubMed ID: 12079344
    [Abstract] [Full Text] [Related]

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