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348 related items for PubMed ID: 11063576

  • 1. Modified nucleoside dependent Watson-Crick and wobble codon binding by tRNALysUUU species.
    Yarian C, Marszalek M, Sochacka E, Malkiewicz A, Guenther R, Miskiewicz A, Agris PF.
    Biochemistry; 2000 Nov 07; 39(44):13390-5. PubMed ID: 11063576
    [Abstract] [Full Text] [Related]

  • 2. Functional anticodon architecture of human tRNALys3 includes disruption of intraloop hydrogen bonding by the naturally occurring amino acid modification, t6A.
    Stuart JW, Gdaniec Z, Guenther R, Marszalek M, Sochacka E, Malkiewicz A, Agris PF.
    Biochemistry; 2000 Nov 07; 39(44):13396-404. PubMed ID: 11063577
    [Abstract] [Full Text] [Related]

  • 3. Human tRNA(Lys3)(UUU) is pre-structured by natural modifications for cognate and wobble codon binding through keto-enol tautomerism.
    Vendeix FA, Murphy FV, Cantara WA, Leszczyńska G, Gustilo EM, Sproat B, Malkiewicz A, Agris PF.
    J Mol Biol; 2012 Mar 02; 416(4):467-85. PubMed ID: 22227389
    [Abstract] [Full Text] [Related]

  • 4. Structural effects of hypermodified nucleosides in the Escherichia coli and human tRNALys anticodon loop: the effect of nucleosides s2U, mcm5U, mcm5s2U, mnm5s2U, t6A, and ms2t6A.
    Durant PC, Bajji AC, Sundaram M, Kumar RK, Davis DR.
    Biochemistry; 2005 Jun 07; 44(22):8078-89. PubMed ID: 15924427
    [Abstract] [Full Text] [Related]

  • 5. The role of modifications in codon discrimination by tRNA(Lys)UUU.
    Murphy FV, Ramakrishnan V, Malkiewicz A, Agris PF.
    Nat Struct Mol Biol; 2004 Dec 07; 11(12):1186-91. PubMed ID: 15558052
    [Abstract] [Full Text] [Related]

  • 6. Hypermodified nucleosides in the anticodon of tRNALys stabilize a canonical U-turn structure.
    Sundaram M, Durant PC, Davis DR.
    Biochemistry; 2000 Oct 17; 39(41):12575-84. PubMed ID: 11027137
    [Abstract] [Full Text] [Related]

  • 7. Synthesis and characterization of the native anticodon domain of E. coli TRNA(Lys): simultaneous incorporation of modified nucleosides mnm(5)s(2)U, t(6)A, and pseudouridine using phosphoramidite chemistry.
    Sundaram M, Crain PF, Davis DR.
    J Org Chem; 2000 Sep 08; 65(18):5609-14. PubMed ID: 10970299
    [Abstract] [Full Text] [Related]

  • 8. Preferences of AAA/AAG codon recognition by modified nucleosides, τm5s2U34 and t6A37 present in tRNALys.
    Sonawane KD, Kamble AS, Fandilolu PM.
    J Biomol Struct Dyn; 2018 Dec 08; 36(16):4182-4196. PubMed ID: 29243556
    [Abstract] [Full Text] [Related]

  • 9. Accurate translation of the genetic code depends on tRNA modified nucleosides.
    Yarian C, Townsend H, Czestkowski W, Sochacka E, Malkiewicz AJ, Guenther R, Miskiewicz A, Agris PF.
    J Biol Chem; 2002 May 10; 277(19):16391-5. PubMed ID: 11861649
    [Abstract] [Full Text] [Related]

  • 10. Functional recognition of the modified human tRNALys3(UUU) anticodon domain by HIV's nucleocapsid protein and a peptide mimic.
    Graham WD, Barley-Maloney L, Stark CJ, Kaur A, Stolarchuk C, Sproat B, Leszczynska G, Malkiewicz A, Safwat N, Mucha P, Guenther R, Agris PF.
    J Mol Biol; 2011 Jul 22; 410(4):698-715. PubMed ID: 21762809
    [Abstract] [Full Text] [Related]

  • 11. Molecular dynamics simulations of human tRNA Lys,3 UUU: the role of modified bases in mRNA recognition.
    McCrate NE, Varner ME, Kim KI, Nagan MC.
    Nucleic Acids Res; 2006 Jul 22; 34(19):5361-8. PubMed ID: 17012271
    [Abstract] [Full Text] [Related]

  • 12. E. coli glutamyl-tRNA synthetase is inhibited by anticodon stem-loop domains and a minihelix.
    Gustilo EM, Dubois DY, Lapointe J, Agris PF.
    RNA Biol; 2007 Jul 22; 4(2):85-92. PubMed ID: 17671438
    [Abstract] [Full Text] [Related]

  • 13. Specificity of phage display selected peptides for modified anticodon stem and loop domains of tRNA.
    Eshete M, Marchbank MT, Deutscher SL, Sproat B, Leszczynska G, Malkiewicz A, Agris PF.
    Protein J; 2007 Jan 22; 26(1):61-73. PubMed ID: 17237992
    [Abstract] [Full Text] [Related]

  • 14. Structural and functional roles of the N1- and N3-protons of psi at tRNA's position 39.
    Yarian CS, Basti MM, Cain RJ, Ansari G, Guenther RH, Sochacka E, Czerwinska G, Malkiewicz A, Agris PF.
    Nucleic Acids Res; 1999 Sep 01; 27(17):3543-9. PubMed ID: 10446245
    [Abstract] [Full Text] [Related]

  • 15. Anticodon domain modifications contribute order to tRNA for ribosome-mediated codon binding.
    Vendeix FA, Dziergowska A, Gustilo EM, Graham WD, Sproat B, Malkiewicz A, Agris PF.
    Biochemistry; 2008 Jun 10; 47(23):6117-29. PubMed ID: 18473483
    [Abstract] [Full Text] [Related]

  • 16. The effect of pseudouridine and pH on the structure and dynamics of the anticodon stem-loop of tRNA(Lys,3).
    Durant PC, Davis DR.
    Nucleic Acids Symp Ser; 1997 Jun 10; (36):56-7. PubMed ID: 9478205
    [Abstract] [Full Text] [Related]

  • 17. Unconventional structure of tRNA(Lys)SUU anticodon explains tRNA's role in bacterial and mammalian ribosomal frameshifting and primer selection by HIV-1.
    Agris PF, Guenther R, Ingram PC, Basti MM, Stuart JW, Sochacka E, Malkiewicz A.
    RNA; 1997 Apr 10; 3(4):420-8. PubMed ID: 9085848
    [Abstract] [Full Text] [Related]

  • 18. An RNA complex of the HIV-1 A-loop and tRNA(Lys,3) is stabilized by nucleoside modifications.
    Bajji AC, Sundaram M, Myszka DG, Davis DR.
    J Am Chem Soc; 2002 Dec 04; 124(48):14302-3. PubMed ID: 12452693
    [Abstract] [Full Text] [Related]

  • 19. Single atom modification (O-->S) of tRNA confers ribosome binding.
    Ashraf SS, Sochacka E, Cain R, Guenther R, Malkiewicz A, Agris PF.
    RNA; 1999 Feb 04; 5(2):188-94. PubMed ID: 10024171
    [Abstract] [Full Text] [Related]

  • 20. YrdC exhibits properties expected of a subunit for a tRNA threonylcarbamoyl transferase.
    Harris KA, Jones V, Bilbille Y, Swairjo MA, Agris PF.
    RNA; 2011 Sep 04; 17(9):1678-87. PubMed ID: 21775474
    [Abstract] [Full Text] [Related]

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