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286 related items for PubMed ID: 11063577

  • 1. Functional anticodon architecture of human tRNALys3 includes disruption of intraloop hydrogen bonding by the naturally occurring amino acid modification, t6A.
    Stuart JW, Gdaniec Z, Guenther R, Marszalek M, Sochacka E, Malkiewicz A, Agris PF.
    Biochemistry; 2000 Nov 07; 39(44):13396-404. PubMed ID: 11063577
    [Abstract] [Full Text] [Related]

  • 2. Modified nucleoside dependent Watson-Crick and wobble codon binding by tRNALysUUU species.
    Yarian C, Marszalek M, Sochacka E, Malkiewicz A, Guenther R, Miskiewicz A, Agris PF.
    Biochemistry; 2000 Nov 07; 39(44):13390-5. PubMed ID: 11063576
    [Abstract] [Full Text] [Related]

  • 3. Human tRNA(Lys3)(UUU) is pre-structured by natural modifications for cognate and wobble codon binding through keto-enol tautomerism.
    Vendeix FA, Murphy FV, Cantara WA, Leszczyńska G, Gustilo EM, Sproat B, Malkiewicz A, Agris PF.
    J Mol Biol; 2012 Mar 02; 416(4):467-85. PubMed ID: 22227389
    [Abstract] [Full Text] [Related]

  • 4. Molecular dynamics simulations of human tRNA Lys,3 UUU: the role of modified bases in mRNA recognition.
    McCrate NE, Varner ME, Kim KI, Nagan MC.
    Nucleic Acids Res; 2006 Mar 02; 34(19):5361-8. PubMed ID: 17012271
    [Abstract] [Full Text] [Related]

  • 5. Structural effects of hypermodified nucleosides in the Escherichia coli and human tRNALys anticodon loop: the effect of nucleosides s2U, mcm5U, mcm5s2U, mnm5s2U, t6A, and ms2t6A.
    Durant PC, Bajji AC, Sundaram M, Kumar RK, Davis DR.
    Biochemistry; 2005 Jun 07; 44(22):8078-89. PubMed ID: 15924427
    [Abstract] [Full Text] [Related]

  • 6. Functional recognition of the modified human tRNALys3(UUU) anticodon domain by HIV's nucleocapsid protein and a peptide mimic.
    Graham WD, Barley-Maloney L, Stark CJ, Kaur A, Stolarchuk C, Sproat B, Leszczynska G, Malkiewicz A, Safwat N, Mucha P, Guenther R, Agris PF.
    J Mol Biol; 2011 Jul 22; 410(4):698-715. PubMed ID: 21762809
    [Abstract] [Full Text] [Related]

  • 7. The naturally occurring N6-threonyl adenine in anticodon loop of Schizosaccharomyces pombe tRNAi causes formation of a unique U-turn motif.
    Lescrinier E, Nauwelaerts K, Zanier K, Poesen K, Sattler M, Herdewijn P.
    Nucleic Acids Res; 2006 Jul 22; 34(10):2878-86. PubMed ID: 16738127
    [Abstract] [Full Text] [Related]

  • 8. YrdC exhibits properties expected of a subunit for a tRNA threonylcarbamoyl transferase.
    Harris KA, Jones V, Bilbille Y, Swairjo MA, Agris PF.
    RNA; 2011 Sep 22; 17(9):1678-87. PubMed ID: 21775474
    [Abstract] [Full Text] [Related]

  • 9. Naturally-occurring modification restricts the anticodon domain conformational space of tRNA(Phe).
    Stuart JW, Koshlap KM, Guenther R, Agris PF.
    J Mol Biol; 2003 Dec 12; 334(5):901-18. PubMed ID: 14643656
    [Abstract] [Full Text] [Related]

  • 10. Specificity of phage display selected peptides for modified anticodon stem and loop domains of tRNA.
    Eshete M, Marchbank MT, Deutscher SL, Sproat B, Leszczynska G, Malkiewicz A, Agris PF.
    Protein J; 2007 Jan 12; 26(1):61-73. PubMed ID: 17237992
    [Abstract] [Full Text] [Related]

  • 11. Posttranscriptional modifications at the 37th position in the anticodon stem-loop of tRNA: structural insights from MD simulations.
    Seelam Prabhakar P, Takyi NA, Wetmore SD.
    RNA; 2021 Feb 12; 27(2):202-220. PubMed ID: 33214333
    [Abstract] [Full Text] [Related]

  • 12. Anticodon domain modifications contribute order to tRNA for ribosome-mediated codon binding.
    Vendeix FA, Dziergowska A, Gustilo EM, Graham WD, Sproat B, Malkiewicz A, Agris PF.
    Biochemistry; 2008 Jun 10; 47(23):6117-29. PubMed ID: 18473483
    [Abstract] [Full Text] [Related]

  • 13. The effect of pseudouridine and pH on the structure and dynamics of the anticodon stem-loop of tRNA(Lys,3).
    Durant PC, Davis DR.
    Nucleic Acids Symp Ser; 1997 Jun 10; (36):56-7. PubMed ID: 9478205
    [Abstract] [Full Text] [Related]

  • 14. The structure of the human tRNALys3 anticodon bound to the HIV genome is stabilized by modified nucleosides and adjacent mismatch base pairs.
    Bilbille Y, Vendeix FA, Guenther R, Malkiewicz A, Ariza X, Vilarrasa J, Agris PF.
    Nucleic Acids Res; 2009 Jun 10; 37(10):3342-53. PubMed ID: 19324888
    [Abstract] [Full Text] [Related]

  • 15. Hypermodified nucleosides in the anticodon of tRNALys stabilize a canonical U-turn structure.
    Sundaram M, Durant PC, Davis DR.
    Biochemistry; 2000 Oct 17; 39(41):12575-84. PubMed ID: 11027137
    [Abstract] [Full Text] [Related]

  • 16. The role of modifications in codon discrimination by tRNA(Lys)UUU.
    Murphy FV, Ramakrishnan V, Malkiewicz A, Agris PF.
    Nat Struct Mol Biol; 2004 Dec 17; 11(12):1186-91. PubMed ID: 15558052
    [Abstract] [Full Text] [Related]

  • 17. Structural and functional roles of the N1- and N3-protons of psi at tRNA's position 39.
    Yarian CS, Basti MM, Cain RJ, Ansari G, Guenther RH, Sochacka E, Czerwinska G, Malkiewicz A, Agris PF.
    Nucleic Acids Res; 1999 Sep 01; 27(17):3543-9. PubMed ID: 10446245
    [Abstract] [Full Text] [Related]

  • 18. Synthesis of the tRNA(Lys,3) anticodon stem-loop domain containing the hypermodified ms2t6A nucleoside.
    Bajji AC, Davis DR.
    J Org Chem; 2002 Jul 26; 67(15):5352-8. PubMed ID: 12126427
    [Abstract] [Full Text] [Related]

  • 19. The crystal structure of HIV reverse-transcription primer tRNA(Lys,3) shows a canonical anticodon loop.
    Bénas P, Bec G, Keith G, Marquet R, Ehresmann C, Ehresmann B, Dumas P.
    RNA; 2000 Oct 26; 6(10):1347-55. PubMed ID: 11073212
    [Abstract] [Full Text] [Related]

  • 20. Stabilization of the anticodon stem-loop of tRNALys,3 by an A+-C base-pair and by pseudouridine.
    Durant PC, Davis DR.
    J Mol Biol; 1999 Jan 08; 285(1):115-31. PubMed ID: 9878393
    [Abstract] [Full Text] [Related]

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