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Journal Abstract Search

137 related items for PubMed ID: 11152134

  • 1. Trp42 rotamers report reduced flexibility when the inhibitor acetyl-pepstatin is bound to HIV-1 protease.
    Ullrich B, Laberge M, Tölgyesi F, Szeltner Z, Polgár L, Fidy J.
    Protein Sci; 2000 Nov; 9(11):2232-45. PubMed ID: 11152134
    [Abstract] [Full Text] [Related]

  • 2. X-ray structure and conformational dynamics of the HIV-1 protease in complex with the inhibitor SDZ283-910: agreement of time-resolved spectroscopy and molecular dynamics simulations.
    Ringhofer S, Kallen J, Dutzler R, Billich A, Visser AJ, Scholz D, Steinhauser O, Schreiber H, Auer M, Kungl AJ.
    J Mol Biol; 1999 Mar 05; 286(4):1147-59. PubMed ID: 10047488
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  • 4. Steady-state kinetics and tryptophan fluorescence properties of halohydrin dehalogenase from Agrobacterium radiobacter. Roles of W139 and W249 in the active site and halide-induced conformational change.
    Tang L, van Merode AE, Lutje Spelberg JH, Fraaije MW, Janssen DB.
    Biochemistry; 2003 Dec 02; 42(47):14057-65. PubMed ID: 14636074
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  • 6. Mapping the suramin-binding sites of human neutrophil elastase: investigation by fluorescence resonance energy transfer and molecular modeling.
    Mély Y, Cadène M, Sylte I, Bieth JG.
    Biochemistry; 1997 Dec 16; 36(50):15624-31. PubMed ID: 9398290
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  • 7. Cooperative fluctuations of unliganded and substrate-bound HIV-1 protease: a structure-based analysis on a variety of conformations from crystallography and molecular dynamics simulations.
    Kurt N, Scott WR, Schiffer CA, Haliloglu T.
    Proteins; 2003 May 15; 51(3):409-22. PubMed ID: 12696052
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  • 8. Cofactor and tryptophan accessibility and unfolding of brain glutamate decarboxylase.
    Rust E, Martin DL, Chen CH.
    Arch Biochem Biophys; 2001 Aug 15; 392(2):333-40. PubMed ID: 11488610
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  • 9. Structural analysis of lead fullerene-based inhibitor bound to human immunodeficiency virus type 1 protease in solution from molecular dynamics simulations.
    Lee VS, Nimmanpipug P, Aruksakunwong O, Promsri S, Sompornpisut P, Hannongbua S.
    J Mol Graph Model; 2007 Sep 15; 26(2):558-70. PubMed ID: 17468026
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  • 10. Fluorescence quenching induced by conformational fluctuations in unsolvated polypeptides.
    Shi X, Duft D, Parks JH.
    J Phys Chem B; 2008 Oct 09; 112(40):12801-15. PubMed ID: 18793007
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  • 11. Fluorescence quenching of dimeric and monomeric forms of yeast hexokinase (PII): effect of substrate binding steady-state and time-resolved fluorescence studies.
    Maity H, Jarori GK.
    Physiol Chem Phys Med NMR; 2002 Oct 09; 34(1):43-60. PubMed ID: 12403274
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  • 12. A molecular dynamics study comparing a wild-type with a multiple drug resistant HIV protease: differences in flap and aspartate 25 cavity dimensions.
    Seibold SA, Cukier RI.
    Proteins; 2007 Nov 15; 69(3):551-65. PubMed ID: 17623840
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  • 13. Conformational dynamics of DnaB helicase upon DNA and nucleotide binding: analysis by intrinsic tryptophan fluorescence quenching.
    Flowers S, Biswas EE, Biswas SB.
    Biochemistry; 2003 Feb 25; 42(7):1910-21. PubMed ID: 12590577
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  • 14. Organization and dynamics of tryptophan residues in tetrameric and monomeric soybean agglutinin: studies by steady-state and time-resolved fluorescence, phosphorescence and chemical modification.
    Molla AR, Maity SS, Ghosh S, Mandal DK.
    Biochimie; 2009 Jul 25; 91(7):857-67. PubMed ID: 19383525
    [Abstract] [Full Text] [Related]

  • 15. Relation between sequence and structure of HIV-1 protease inhibitor complexes: a model system for the analysis of protein flexibility.
    Zoete V, Michielin O, Karplus M.
    J Mol Biol; 2002 Jan 04; 315(1):21-52. PubMed ID: 11771964
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  • 16. Theoretical studies of relaxation of a monomeric subunit of HIV-1 protease in water using molecular dynamics.
    Venable RM, Brooks BR, Carson FW.
    Proteins; 1993 Apr 04; 15(4):374-84. PubMed ID: 8460108
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  • 17. Molecular dynamics simulations of ligand-induced flap closing in HIV-1 protease approach X-ray resolution: establishing the role of bound water in the flap closing mechanism.
    Singh G, Senapati S.
    Biochemistry; 2008 Oct 07; 47(40):10657-64. PubMed ID: 18785756
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  • 19. Correlation of tryptophan fluorescence spectral shifts and lifetimes arising directly from heterogeneous environment.
    Pan CP, Muiño PL, Barkley MD, Callis PR.
    J Phys Chem B; 2011 Mar 31; 115(12):3245-53. PubMed ID: 21370844
    [Abstract] [Full Text] [Related]

  • 20. Molecular dynamics simulations of Trp side-chain conformational flexibility in the gramicidin A channel.
    Bingham NC, Smith NE, Cross TA, Busath DD.
    Biopolymers; 2003 Mar 31; 71(5):593-600. PubMed ID: 14635099
    [Abstract] [Full Text] [Related]

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