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Journal Abstract Search

188 related items for PubMed ID: 11162082

  • 1. Molecular dynamics simulation reveals conformational switching of water-mediated uracil-cytosine base-pairs in an RNA duplex.
    Schneider C, Brandl M, Sühnel J.
    J Mol Biol; 2001 Jan 26; 305(4):659-67. PubMed ID: 11162082
    [Abstract] [Full Text] [Related]

  • 2. Molecular dynamics of the frame-shifting pseudoknot from beet western yellows virus: the role of non-Watson-Crick base-pairing, ordered hydration, cation binding and base mutations on stability and unfolding.
    Csaszar K, Spacková N, Stefl R, Sponer J, Leontis NB.
    J Mol Biol; 2001 Nov 09; 313(5):1073-91. PubMed ID: 11700064
    [Abstract] [Full Text] [Related]

  • 3. Structure model and physicochemical properties of the C-U mismatch pair in the double stranded RNA in solution.
    Tanaka Y, Kojima C, Yamazaki T, Kyogoku Y, Miyashita S, Ono A, Kainosho M.
    Nucleic Acids Symp Ser; 1997 Nov 09; (37):271-2. PubMed ID: 9586104
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  • 4. Crystal structure of an RNA double helix incorporating a track of non-Watson-Crick base pairs.
    Holbrook SR, Cheong C, Tinoco I, Kim SH.
    Nature; 1991 Oct 10; 353(6344):579-81. PubMed ID: 1922368
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  • 5. The crystal structure of the octamer [r(guauaca)dC]2 with six Watson-Crick base-pairs and two 3' overhang residues.
    Shi K, Biswas R, Mitra SN, Sundaralingam M.
    J Mol Biol; 2000 May 26; 299(1):113-22. PubMed ID: 10860726
    [Abstract] [Full Text] [Related]

  • 6. Aminoglycoside binding in the major groove of duplex RNA: the thermodynamic and electrostatic forces that govern recognition.
    Jin E, Katritch V, Olson WK, Kharatisvili M, Abagyan R, Pilch DS.
    J Mol Biol; 2000 Apr 21; 298(1):95-110. PubMed ID: 10756107
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  • 7. Water and ion binding around r(UpA)12 and d(TpA)12 oligomers--comparison with RNA and DNA (CpG)12 duplexes.
    Auffinger P, Westhof E.
    J Mol Biol; 2001 Feb 02; 305(5):1057-72. PubMed ID: 11162114
    [Abstract] [Full Text] [Related]

  • 8. Parallel DNA double helices incorporating isoG or m5isoC bases studied by FTIR, CD and molecular modeling.
    Geinguenaud F, Mondragon-Sanchez JA, Liquier J, Shchyolkina AK, Klement R, Arndt-Jovin DJ, Jovin TM, Taillandier E.
    Spectrochim Acta A Mol Biomol Spectrosc; 2005 Feb 02; 61(4):579-87. PubMed ID: 15649787
    [Abstract] [Full Text] [Related]

  • 9. Nuclear magnetic resonance spectroscopy and molecular modeling reveal that different hydrogen bonding patterns are possible for G.U pairs: one hydrogen bond for each G.U pair in r(GGCGUGCC)(2) and two for each G.U pair in r(GAGUGCUC)(2).
    Chen X, McDowell JA, Kierzek R, Krugh TR, Turner DH.
    Biochemistry; 2000 Aug 01; 39(30):8970-82. PubMed ID: 10913310
    [Abstract] [Full Text] [Related]

  • 10. Unrestrained 5 ns molecular dynamics simulation of a cisplatin-DNA 1,2-GG adduct provides a rationale for the NMR features and reveals increased conformational flexibility at the platinum binding site.
    Elizondo-Riojas MA, Kozelka J.
    J Mol Biol; 2001 Dec 14; 314(5):1227-43. PubMed ID: 11743736
    [Abstract] [Full Text] [Related]

  • 11. Conformational features of the four successive non-Watson-Crick base pairs in RNA duplex.
    Fujii S, Tanaka Y, Uesugi S, Tanaka T, Sakata T, Hiroaki H.
    Nucleic Acids Symp Ser; 1992 Dec 14; (27):63-4. PubMed ID: 1283916
    [Abstract] [Full Text] [Related]

  • 12. Structure of an RNA internal loop consisting of tandem C-A+ base pairs.
    Jang SB, Hung LW, Chi YI, Holbrook EL, Carter RJ, Holbrook SR.
    Biochemistry; 1998 Aug 25; 37(34):11726-31. PubMed ID: 9718295
    [Abstract] [Full Text] [Related]

  • 13. Interaction between the Z-type DNA duplex and 1,3-propanediamine: crystal structure of d(CACGTG)2 at 1.2 A resolution.
    Narayana N, Shamala N, Ganesh KN, Viswamitra MA.
    Biochemistry; 2006 Jan 31; 45(4):1200-11. PubMed ID: 16430216
    [Abstract] [Full Text] [Related]

  • 14. Solution structure of a DNA double helix incorporating four consecutive non-Watson-Crick base-pairs.
    Chou SH, Chin KH.
    J Mol Biol; 2001 Sep 28; 312(4):769-81. PubMed ID: 11575931
    [Abstract] [Full Text] [Related]

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  • 18. Water-mediated contacts in the trp-repressor operator complex recognition process.
    Wibowo FR, Rauch C, Trieb M, Wellenzohn B, Liedl KR.
    Biopolymers; 2004 Apr 15; 73(6):668-81. PubMed ID: 15048770
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