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415 related items for PubMed ID: 11183777

  • 1. NMR and molecular dynamics studies of the hydration of a zinc finger-DNA complex.
    Tsui V, Radhakrishnan I, Wright PE, Case DA.
    J Mol Biol; 2000 Oct 06; 302(5):1101-17. PubMed ID: 11183777
    [Abstract] [Full Text] [Related]

  • 2. Water molecules in DNA recognition II: a molecular dynamics view of the structure and hydration of the trp operator.
    Bonvin AM, Sunnerhagen M, Otting G, van Gunsteren WF.
    J Mol Biol; 1998 Oct 02; 282(4):859-73. PubMed ID: 9743632
    [Abstract] [Full Text] [Related]

  • 3. Solution structure of the first three zinc fingers of TFIIIA bound to the cognate DNA sequence: determinants of affinity and sequence specificity.
    Wuttke DS, Foster MP, Case DA, Gottesfeld JM, Wright PE.
    J Mol Biol; 1997 Oct 17; 273(1):183-206. PubMed ID: 9367756
    [Abstract] [Full Text] [Related]

  • 4. Water molecules in DNA recognition I: hydration lifetimes of trp operator DNA in solution measured by NMR spectroscopy.
    Sunnerhagen M, Denisov VP, Venu K, Bonvin AM, Carey J, Halle B, Otting G.
    J Mol Biol; 1998 Oct 02; 282(4):847-58. PubMed ID: 9743631
    [Abstract] [Full Text] [Related]

  • 5. DNA-induced alpha-helix capping in conserved linker sequences is a determinant of binding affinity in Cys(2)-His(2) zinc fingers.
    Laity JH, Dyson HJ, Wright PE.
    J Mol Biol; 2000 Jan 28; 295(4):719-27. PubMed ID: 10656784
    [Abstract] [Full Text] [Related]

  • 6. Rearrangement of side-chains in a Zif268 mutant highlights the complexities of zinc finger-DNA recognition.
    Miller JC, Pabo CO.
    J Mol Biol; 2001 Oct 19; 313(2):309-15. PubMed ID: 11800559
    [Abstract] [Full Text] [Related]

  • 7. Structure, dynamics and hydration of the nogalamycin-d(ATGCAT)2Complex determined by NMR and molecular dynamics simulations in solution.
    Williams HE, Searle MS.
    J Mol Biol; 1999 Jul 16; 290(3):699-716. PubMed ID: 10395824
    [Abstract] [Full Text] [Related]

  • 8. Dissection of the DNA-binding domain of Xenopus laevis TFIIIA. Quantitative DNase I footprinting analysis of specific complexes between a 5 S RNA gene fragment and N-terminal fragments of TFIIIA containing three, four or five zinc-finger domains.
    Hansen PK, Christensen JH, Nyborg J, Lillelund O, Thøgersen HC.
    J Mol Biol; 1993 Sep 20; 233(2):191-202. PubMed ID: 8377197
    [Abstract] [Full Text] [Related]

  • 9. Importance of minor groove binding zinc fingers within the transcription factor IIIA-DNA complex.
    Neely L, Trauger JW, Baird EE, Dervan PB, Gottesfeld JM.
    J Mol Biol; 1997 Dec 12; 274(4):439-45. PubMed ID: 9417925
    [Abstract] [Full Text] [Related]

  • 10. Water and ion binding around RNA and DNA (C,G) oligomers.
    Auffinger P, Westhof E.
    J Mol Biol; 2000 Jul 28; 300(5):1113-31. PubMed ID: 10903858
    [Abstract] [Full Text] [Related]

  • 11. Insights into the molecular recognition of the 5'-GNN-3' family of DNA sequences by zinc finger domains.
    Dreier B, Segal DJ, Barbas CF.
    J Mol Biol; 2000 Nov 03; 303(4):489-502. PubMed ID: 11054286
    [Abstract] [Full Text] [Related]

  • 12. Water and ion binding around r(UpA)12 and d(TpA)12 oligomers--comparison with RNA and DNA (CpG)12 duplexes.
    Auffinger P, Westhof E.
    J Mol Biol; 2001 Feb 02; 305(5):1057-72. PubMed ID: 11162114
    [Abstract] [Full Text] [Related]

  • 13. Determination of the nuclear magnetic resonance solution structure of an Antennapedia homeodomain-DNA complex.
    Billeter M, Qian YQ, Otting G, Müller M, Gehring W, Wüthrich K.
    J Mol Biol; 1993 Dec 20; 234(4):1084-93. PubMed ID: 7903398
    [Abstract] [Full Text] [Related]

  • 14. Conformational states of the glucocorticoid receptor DNA-binding domain from molecular dynamics simulations.
    Bredenberg J, Nilsson L.
    Proteins; 2002 Oct 01; 49(1):24-36. PubMed ID: 12211013
    [Abstract] [Full Text] [Related]

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  • 16. Water-mediated contacts in the trp-repressor operator complex recognition process.
    Wibowo FR, Rauch C, Trieb M, Wellenzohn B, Liedl KR.
    Biopolymers; 2004 Apr 15; 73(6):668-81. PubMed ID: 15048770
    [Abstract] [Full Text] [Related]

  • 17. Do water molecules mediate protein-DNA recognition?
    Reddy CK, Das A, Jayaram B.
    J Mol Biol; 2001 Nov 30; 314(3):619-32. PubMed ID: 11846571
    [Abstract] [Full Text] [Related]

  • 18. The role of the central zinc fingers of transcription factor IIIA in binding to 5 S RNA.
    Searles MA, Lu D, Klug A.
    J Mol Biol; 2000 Aug 04; 301(1):47-60. PubMed ID: 10926492
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