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Journal Abstract Search

279 related items for PubMed ID: 11254392

  • 1. Pairwise sequence alignment below the twilight zone.
    Blake JD, Cohen FE.
    J Mol Biol; 2001 Mar 23; 307(2):721-35. PubMed ID: 11254392
    [Abstract] [Full Text] [Related]

  • 2. An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.
    Yang AS, Honig B.
    J Mol Biol; 2000 Aug 18; 301(3):691-711. PubMed ID: 10966778
    [Abstract] [Full Text] [Related]

  • 3. An assessment of amino acid exchange matrices in aligning protein sequences: the twilight zone revisited.
    Vogt G, Etzold T, Argos P.
    J Mol Biol; 1995 Jun 16; 249(4):816-31. PubMed ID: 7602593
    [Abstract] [Full Text] [Related]

  • 4. NdPASA: a novel pairwise protein sequence alignment algorithm that incorporates neighbor-dependent amino acid propensities.
    Wang J, Feng JA.
    Proteins; 2005 Feb 15; 58(3):628-37. PubMed ID: 15616964
    [Abstract] [Full Text] [Related]

  • 5. A 3D-1D substitution matrix for protein fold recognition that includes predicted secondary structure of the sequence.
    Rice DW, Eisenberg D.
    J Mol Biol; 1997 Apr 11; 267(4):1026-38. PubMed ID: 9135128
    [Abstract] [Full Text] [Related]

  • 6. Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments.
    Gotoh O.
    J Mol Biol; 1996 Dec 13; 264(4):823-38. PubMed ID: 8980688
    [Abstract] [Full Text] [Related]

  • 7. Benchmarking PSI-BLAST in genome annotation.
    Müller A, MacCallum RM, Sternberg MJ.
    J Mol Biol; 1999 Nov 12; 293(5):1257-71. PubMed ID: 10547299
    [Abstract] [Full Text] [Related]

  • 8. Alignment and searching for common protein folds using a data bank of structural templates.
    Johnson MS, Overington JP, Blundell TL.
    J Mol Biol; 1993 Jun 05; 231(3):735-52. PubMed ID: 8515448
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  • 10. Beyond the Twilight Zone: automated prediction of structural properties of proteins by recursive neural networks and remote homology information.
    Mooney C, Pollastri G.
    Proteins; 2009 Oct 05; 77(1):181-90. PubMed ID: 19422056
    [Abstract] [Full Text] [Related]

  • 11. DPANN: improved sequence to structure alignments following fold recognition.
    Reinhardt A, Eisenberg D.
    Proteins; 2004 Aug 15; 56(3):528-38. PubMed ID: 15229885
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  • 13. Accuracy of sequence alignment and fold assessment using reduced amino acid alphabets.
    Melo F, Marti-Renom MA.
    Proteins; 2006 Jun 01; 63(4):986-95. PubMed ID: 16506243
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  • 15. [Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes].
    Zhang DL, Ji L, Li YD.
    Yi Chuan Xue Bao; 2004 May 01; 31(5):431-43. PubMed ID: 15478601
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  • 17. PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
    Pei J, Grishin NV.
    Bioinformatics; 2007 Apr 01; 23(7):802-8. PubMed ID: 17267437
    [Abstract] [Full Text] [Related]

  • 18. Use of residue pairs in protein sequence-sequence and sequence-structure alignments.
    Jung J, Lee B.
    Protein Sci; 2000 Aug 01; 9(8):1576-88. PubMed ID: 10975579
    [Abstract] [Full Text] [Related]

  • 19. Periodic distributions of hydrophobic amino acids allows the definition of fundamental building blocks to align distantly related proteins.
    Baussand J, Deremble C, Carbone A.
    Proteins; 2007 May 15; 67(3):695-708. PubMed ID: 17299747
    [Abstract] [Full Text] [Related]

  • 20. PASS2: an automated database of protein alignments organised as structural superfamilies.
    Bhaduri A, Pugalenthi G, Sowdhamini R.
    BMC Bioinformatics; 2004 Apr 02; 5():35. PubMed ID: 15059245
    [Abstract] [Full Text] [Related]

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