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PUBMED FOR HANDHELDS

Journal Abstract Search


216 related items for PubMed ID: 11382360

  • 1. Modeling amino acid replacement.
    Müller T, Vingron M.
    J Comput Biol; 2000; 7(6):761-76. PubMed ID: 11382360
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  • 4. Empirical models for substitution in ribosomal RNA.
    Smith AD, Lui TW, Tillier ER.
    Mol Biol Evol; 2004 Mar; 21(3):419-27. PubMed ID: 14660689
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  • 5. An amino acid substitution-selection model adjusts residue fitness to improve phylogenetic estimation.
    Wang HC, Susko E, Roger AJ.
    Mol Biol Evol; 2014 Apr; 31(4):779-92. PubMed ID: 24441033
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  • 8. FastMG: a simple, fast, and accurate maximum likelihood procedure to estimate amino acid replacement rate matrices from large data sets.
    Dang CC, Le VS, Gascuel O, Hazes B, Le QS.
    BMC Bioinformatics; 2014 Oct 24; 15(1):341. PubMed ID: 25344302
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  • 9. A method to estimate effects of amino acid substitutions in blood coagulation factor IX from hemophilia B patients.
    Furutani H.
    Medinfo; 1995 Oct 24; 8 Pt 2():909. PubMed ID: 8591581
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  • 10. Testing homology with Contact Accepted mutatiOn (CAO): a contact-based Markov model of protein evolution.
    Lin K, Kleinjung J, Taylor WR, Heringa J.
    Comput Biol Chem; 2003 May 24; 27(2):93-102. PubMed ID: 12821306
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  • 13. A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach.
    Whelan S, Goldman N.
    Mol Biol Evol; 2001 May 24; 18(5):691-9. PubMed ID: 11319253
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  • 15. CodonTest: modeling amino acid substitution preferences in coding sequences.
    Delport W, Scheffler K, Botha G, Gravenor MB, Muse SV, Kosakovsky Pond SL.
    PLoS Comput Biol; 2010 Aug 19; 6(8):. PubMed ID: 20808876
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  • 16. A 20-state empirical amino-acid substitution model for green plant chloroplasts.
    Cox CJ, Foster PG.
    Mol Phylogenet Evol; 2013 Aug 19; 68(2):218-20. PubMed ID: 23567023
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  • 17. An expectation maximization algorithm for training hidden substitution models.
    Holmes I, Rubin GM.
    J Mol Biol; 2002 Apr 12; 317(5):753-64. PubMed ID: 11955022
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  • 18. An alternative model of amino acid replacement.
    Crooks GE, Brenner SE.
    Bioinformatics; 2005 Apr 01; 21(7):975-80. PubMed ID: 15531614
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  • 19. Non-Markovian effects on protein sequence evolution due to site dependent substitution rates.
    Rizzato F, Rodriguez A, Laio A.
    BMC Bioinformatics; 2016 Jun 24; 17():258. PubMed ID: 27342318
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  • 20. A protein evolution model with independent sites that reproduces site-specific amino acid distributions from the Protein Data Bank.
    Bastolla U, Porto M, Roman HE, Vendruscolo M.
    BMC Evol Biol; 2006 May 31; 6():43. PubMed ID: 16737532
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