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Journal Abstract Search

543 related items for PubMed ID: 11491298

  • 1. Essential dynamics of reversible peptide folding: memory-free conformational dynamics governed by internal hydrogen bonds.
    de Groot BL, Daura X, Mark AE, Grubmüller H.
    J Mol Biol; 2001 May 25; 309(1):299-313. PubMed ID: 11491298
    [Abstract] [Full Text] [Related]

  • 2. Cooperative folding mechanism of a beta-hairpin peptide studied by a multicanonical replica-exchange molecular dynamics simulation.
    Yoda T, Sugita Y, Okamoto Y.
    Proteins; 2007 Mar 01; 66(4):846-59. PubMed ID: 17173285
    [Abstract] [Full Text] [Related]

  • 3. Helix nucleation kinetics from molecular simulations in explicit solvent.
    Hummer G, García AE, Garde S.
    Proteins; 2001 Jan 01; 42(1):77-84. PubMed ID: 11093262
    [Abstract] [Full Text] [Related]

  • 4. Conformational dynamics of cytochrome c: correlation to hydrogen exchange.
    García AE, Hummer G.
    Proteins; 1999 Aug 01; 36(2):175-91. PubMed ID: 10398365
    [Abstract] [Full Text] [Related]

  • 5. Folding of horse cytochrome c in the reduced state.
    Bhuyan AK, Udgaonkar JB.
    J Mol Biol; 2001 Oct 05; 312(5):1135-60. PubMed ID: 11580255
    [Abstract] [Full Text] [Related]

  • 6. Molecular dynamics simulations of folding processes of a beta-hairpin in an implicit solvent.
    Chen C, Xiao Y.
    Phys Biol; 2006 Aug 24; 3(3):161-71. PubMed ID: 17021380
    [Abstract] [Full Text] [Related]

  • 7. Molecular dynamics simulations of protein unfolding and limited refolding: characterization of partially unfolded states of ubiquitin in 60% methanol and in water.
    Alonso DO, Daggett V.
    J Mol Biol; 1995 Mar 31; 247(3):501-20. PubMed ID: 7714903
    [Abstract] [Full Text] [Related]

  • 8. The folding mechanism of collagen-like model peptides explored through detailed molecular simulations.
    Stultz CM.
    Protein Sci; 2006 Sep 31; 15(9):2166-77. PubMed ID: 16943446
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  • 14. Backbone dynamics, fast folding, and secondary structure formation in helical proteins and peptides.
    Hardin C, Luthey-Schulten Z, Wolynes PG.
    Proteins; 1999 Feb 15; 34(3):281-94. PubMed ID: 10024016
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  • 15. Identification and characterization of the unfolding transition state of chymotrypsin inhibitor 2 by molecular dynamics simulations.
    Li A, Daggett V.
    J Mol Biol; 1996 Mar 29; 257(2):412-29. PubMed ID: 8609633
    [Abstract] [Full Text] [Related]

  • 16. Equilibrium hydrogen exchange reveals extensive hydrogen bonded secondary structure in the on-pathway intermediate of Im7.
    Gorski SA, Le Duff CS, Capaldi AP, Kalverda AP, Beddard GS, Moore GR, Radford SE.
    J Mol Biol; 2004 Mar 12; 337(1):183-93. PubMed ID: 15001361
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  • 17. Temperature-induced unfolding pathway of a type III antifreeze protein: insight from molecular dynamics simulation.
    Kundu S, Roy D.
    J Mol Graph Model; 2008 Aug 12; 27(1):88-94. PubMed ID: 18434222
    [Abstract] [Full Text] [Related]

  • 18. Comparative study of generalized born models: Born radii and peptide folding.
    Zhu J, Alexov E, Honig B.
    J Phys Chem B; 2005 Feb 24; 109(7):3008-22. PubMed ID: 16851315
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  • 19. Towards a consistent modeling of protein thermodynamic and kinetic cooperativity: how applicable is the transition state picture to folding and unfolding?
    Kaya H, Chan HS.
    J Mol Biol; 2002 Jan 25; 315(4):899-909. PubMed ID: 11812156
    [Abstract] [Full Text] [Related]

  • 20. The folding pathway of ubiquitin from all-atom molecular dynamics simulations.
    Marianayagam NJ, Jackson SE.
    Biophys Chem; 2004 Oct 01; 111(2):159-71. PubMed ID: 15381313
    [Abstract] [Full Text] [Related]

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