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Journal Abstract Search

188 related items for PubMed ID: 11786026

  • 21. Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space.
    Fromer M, Yanover C.
    Proteins; 2009 May 15; 75(3):682-705. PubMed ID: 19003998
    [Abstract] [Full Text] [Related]

  • 22. Prediction of protein-protein interface sequence diversity using flexible backbone computational protein design.
    Humphris EL, Kortemme T.
    Structure; 2008 Dec 10; 16(12):1777-88. PubMed ID: 19081054
    [Abstract] [Full Text] [Related]

  • 23. Evolutionary protein stabilization in comparison with computational design.
    Wunderlich M, Martin A, Staab CA, Schmid FX.
    J Mol Biol; 2005 Sep 02; 351(5):1160-8. PubMed ID: 16051264
    [Abstract] [Full Text] [Related]

  • 24. High-resolution prediction of protein helix positions and orientations.
    Li X, Jacobson MP, Friesner RA.
    Proteins; 2004 May 01; 55(2):368-82. PubMed ID: 15048828
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  • 25. Entropy capacity determines protein folding.
    Galzitskaya OV, Garbuzynskiy SO.
    Proteins; 2006 Apr 01; 63(1):144-54. PubMed ID: 16400647
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  • 26. Expanded turn conformations: characterization and sequence-structure correspondence in alpha-turns with implications in helix folding.
    Dasgupta B, Pal L, Basu G, Chakrabarti P.
    Proteins; 2004 May 01; 55(2):305-15. PubMed ID: 15048823
    [Abstract] [Full Text] [Related]

  • 27. Conversion of type I 4:6 to 3:5 beta-turn types in human acidic fibroblast growth factor: effects upon structure, stability, folding, and mitogenic function.
    Lee J, Dubey VK, Somasundaram T, Blaber M.
    Proteins; 2006 Mar 15; 62(3):686-97. PubMed ID: 16355415
    [Abstract] [Full Text] [Related]

  • 28. Monte Carlo simulation of protein folding in the presence of residue-specific binding sites.
    Rossinsky E, Srebnik S.
    Biopolymers; 2005 Dec 05; 79(5):259-68. PubMed ID: 16134169
    [Abstract] [Full Text] [Related]

  • 29. Tryptophan rich peptides: influence of indole rings on backbone conformation.
    Mahalakshmi R, Sengupta A, Raghothama S, Shamala N, Balaram P.
    Biopolymers; 2007 Dec 05; 88(1):36-54. PubMed ID: 17091496
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  • 30. The folding landscape of an alpha-lytic protease variant reveals the role of a conserved beta-hairpin in the development of kinetic stability.
    Truhlar SM, Agard DA.
    Proteins; 2005 Oct 01; 61(1):105-14. PubMed ID: 16044461
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  • 31. Physical-chemical determinants of turn conformations in globular proteins.
    Street TO, Fitzkee NC, Perskie LL, Rose GD.
    Protein Sci; 2007 Aug 01; 16(8):1720-7. PubMed ID: 17656584
    [Abstract] [Full Text] [Related]

  • 32. Peptide models XLV: conformational properties of N-formyl-L-methioninamide and its relevance to methionine in proteins.
    Láng A, Csizmadia IG, Perczel A.
    Proteins; 2005 Feb 15; 58(3):571-88. PubMed ID: 15616985
    [Abstract] [Full Text] [Related]

  • 33. Conformational strain in the hydrophobic core and its implications for protein folding and design.
    Ventura S, Vega MC, Lacroix E, Angrand I, Spagnolo L, Serrano L.
    Nat Struct Biol; 2002 Jun 15; 9(6):485-93. PubMed ID: 12006985
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  • 34. Binding hot spots in the TEM1-BLIP interface in light of its modular architecture.
    Reichmann D, Cohen M, Abramovich R, Dym O, Lim D, Strynadka NC, Schreiber G.
    J Mol Biol; 2007 Jan 19; 365(3):663-79. PubMed ID: 17070843
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  • 35. Cooperative folding mechanism of a beta-hairpin peptide studied by a multicanonical replica-exchange molecular dynamics simulation.
    Yoda T, Sugita Y, Okamoto Y.
    Proteins; 2007 Mar 01; 66(4):846-59. PubMed ID: 17173285
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  • 36. Aromatic residues engineered into the beta-turn nucleation site of ubiquitin lead to a complex folding landscape, non-native side-chain interactions, and kinetic traps.
    Rea AM, Simpson ER, Meldrum JK, Williams HE, Searle MS.
    Biochemistry; 2008 Dec 02; 47(48):12910-22. PubMed ID: 18991391
    [Abstract] [Full Text] [Related]

  • 37. Folding mechanisms of proteins with high sequence identity but different folds.
    Scott KA, Daggett V.
    Biochemistry; 2007 Feb 13; 46(6):1545-56. PubMed ID: 17279619
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  • 38. Natural selection for kinetic stability is a likely origin of correlations between mutational effects on protein energetics and frequencies of amino acid occurrences in sequence alignments.
    Godoy-Ruiz R, Ariza F, Rodriguez-Larrea D, Perez-Jimenez R, Ibarra-Molero B, Sanchez-Ruiz JM.
    J Mol Biol; 2006 Oct 06; 362(5):966-78. PubMed ID: 16935299
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  • 39. Redesigning the type II' β-turn in green fluorescent protein to type I': implications for folding kinetics and stability.
    Madan B, Sokalingam S, Raghunathan G, Lee SG.
    Proteins; 2014 Oct 06; 82(10):2812-22. PubMed ID: 25044033
    [Abstract] [Full Text] [Related]

  • 40. The single helix in protein L is largely disrupted at the rate-limiting step in folding.
    Kim DE, Yi Q, Gladwin ST, Goldberg JM, Baker D.
    J Mol Biol; 1998 Dec 04; 284(3):807-15. PubMed ID: 9826517
    [Abstract] [Full Text] [Related]

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