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430 related items for PubMed ID: 11861649

  • 1. Accurate translation of the genetic code depends on tRNA modified nucleosides.
    Yarian C, Townsend H, Czestkowski W, Sochacka E, Malkiewicz AJ, Guenther R, Miskiewicz A, Agris PF.
    J Biol Chem; 2002 May 10; 277(19):16391-5. PubMed ID: 11861649
    [Abstract] [Full Text] [Related]

  • 2. Modified nucleoside dependent Watson-Crick and wobble codon binding by tRNALysUUU species.
    Yarian C, Marszalek M, Sochacka E, Malkiewicz A, Guenther R, Miskiewicz A, Agris PF.
    Biochemistry; 2000 Nov 07; 39(44):13390-5. PubMed ID: 11063576
    [Abstract] [Full Text] [Related]

  • 3. Preferences of AAA/AAG codon recognition by modified nucleosides, τm5s2U34 and t6A37 present in tRNALys.
    Sonawane KD, Kamble AS, Fandilolu PM.
    J Biomol Struct Dyn; 2018 Dec 07; 36(16):4182-4196. PubMed ID: 29243556
    [Abstract] [Full Text] [Related]

  • 4. Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code.
    Rozov A, Demeshkina N, Khusainov I, Westhof E, Yusupov M, Yusupova G.
    Nat Commun; 2016 Jan 21; 7():10457. PubMed ID: 26791911
    [Abstract] [Full Text] [Related]

  • 5. Human tRNA(Lys3)(UUU) is pre-structured by natural modifications for cognate and wobble codon binding through keto-enol tautomerism.
    Vendeix FA, Murphy FV, Cantara WA, Leszczyńska G, Gustilo EM, Sproat B, Malkiewicz A, Agris PF.
    J Mol Biol; 2012 Mar 02; 416(4):467-85. PubMed ID: 22227389
    [Abstract] [Full Text] [Related]

  • 6. Decoding the genome: a modified view.
    Agris PF.
    Nucleic Acids Res; 2004 Mar 02; 32(1):223-38. PubMed ID: 14715921
    [Abstract] [Full Text] [Related]

  • 7. Structural and mechanistic basis for enhanced translational efficiency by 2-thiouridine at the tRNA anticodon wobble position.
    Rodriguez-Hernandez A, Spears JL, Gaston KW, Limbach PA, Gamper H, Hou YM, Kaiser R, Agris PF, Perona JJ.
    J Mol Biol; 2013 Oct 23; 425(20):3888-906. PubMed ID: 23727144
    [Abstract] [Full Text] [Related]

  • 8. The role of modifications in codon discrimination by tRNA(Lys)UUU.
    Murphy FV, Ramakrishnan V, Malkiewicz A, Agris PF.
    Nat Struct Mol Biol; 2004 Dec 23; 11(12):1186-91. PubMed ID: 15558052
    [Abstract] [Full Text] [Related]

  • 9. Structural effects of hypermodified nucleosides in the Escherichia coli and human tRNALys anticodon loop: the effect of nucleosides s2U, mcm5U, mcm5s2U, mnm5s2U, t6A, and ms2t6A.
    Durant PC, Bajji AC, Sundaram M, Kumar RK, Davis DR.
    Biochemistry; 2005 Jun 07; 44(22):8078-89. PubMed ID: 15924427
    [Abstract] [Full Text] [Related]

  • 10. tRNA's wobble decoding of the genome: 40 years of modification.
    Agris PF, Vendeix FA, Graham WD.
    J Mol Biol; 2007 Feb 09; 366(1):1-13. PubMed ID: 17187822
    [Abstract] [Full Text] [Related]

  • 11. C5-substituents of uridines and 2-thiouridines present at the wobble position of tRNA determine the formation of their keto-enol or zwitterionic forms - a factor important for accuracy of reading of guanosine at the 3΄-end of the mRNA codons.
    Sochacka E, Lodyga-Chruscinska E, Pawlak J, Cypryk M, Bartos P, Ebenryter-Olbinska K, Leszczynska G, Nawrot B.
    Nucleic Acids Res; 2017 May 05; 45(8):4825-4836. PubMed ID: 28088758
    [Abstract] [Full Text] [Related]

  • 12. Molecular dynamics simulations of human tRNA Lys,3 UUU: the role of modified bases in mRNA recognition.
    McCrate NE, Varner ME, Kim KI, Nagan MC.
    Nucleic Acids Res; 2006 May 05; 34(19):5361-8. PubMed ID: 17012271
    [Abstract] [Full Text] [Related]

  • 13. Nucleoside modifications in the regulation of gene expression: focus on tRNA.
    Duechler M, Leszczyńska G, Sochacka E, Nawrot B.
    Cell Mol Life Sci; 2016 Aug 05; 73(16):3075-95. PubMed ID: 27094388
    [Abstract] [Full Text] [Related]

  • 14. Biogenesis and growth phase-dependent alteration of 5-methoxycarbonylmethoxyuridine in tRNA anticodons.
    Sakai Y, Miyauchi K, Kimura S, Suzuki T.
    Nucleic Acids Res; 2016 Jan 29; 44(2):509-23. PubMed ID: 26681692
    [Abstract] [Full Text] [Related]

  • 15. Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U.G wobble pairing during decoding.
    Kurata S, Weixlbaumer A, Ohtsuki T, Shimazaki T, Wada T, Kirino Y, Takai K, Watanabe K, Ramakrishnan V, Suzuki T.
    J Biol Chem; 2008 Jul 04; 283(27):18801-11. PubMed ID: 18456657
    [Abstract] [Full Text] [Related]

  • 16. The Importance of Being Modified: The Role of RNA Modifications in Translational Fidelity.
    Agris PF, Narendran A, Sarachan K, Väre VYP, Eruysal E.
    Enzymes; 2017 Jul 04; 41():1-50. PubMed ID: 28601219
    [Abstract] [Full Text] [Related]

  • 17. The role of wobble uridine modifications in +1 translational frameshifting in eukaryotes.
    Tükenmez H, Xu H, Esberg A, Byström AS.
    Nucleic Acids Res; 2015 Oct 30; 43(19):9489-99. PubMed ID: 26283182
    [Abstract] [Full Text] [Related]

  • 18. Independent suppression of ribosomal +1 frameshifts by different tRNA anticodon loop modifications.
    Klassen R, Bruch A, Schaffrath R.
    RNA Biol; 2017 Sep 02; 14(9):1252-1259. PubMed ID: 27937809
    [Abstract] [Full Text] [Related]

  • 19. Identification and codon reading properties of 5-cyanomethyl uridine, a new modified nucleoside found in the anticodon wobble position of mutant haloarchaeal isoleucine tRNAs.
    Mandal D, Köhrer C, Su D, Babu IR, Chan CT, Liu Y, Söll D, Blum P, Kuwahara M, Dedon PC, Rajbhandary UL.
    RNA; 2014 Feb 02; 20(2):177-88. PubMed ID: 24344322
    [Abstract] [Full Text] [Related]

  • 20. Deciphering the reading of the genetic code by near-cognate tRNA.
    Blanchet S, Cornu D, Hatin I, Grosjean H, Bertin P, Namy O.
    Proc Natl Acad Sci U S A; 2018 Mar 20; 115(12):3018-3023. PubMed ID: 29507244
    [Abstract] [Full Text] [Related]

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