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Journal Abstract Search

160 related items for PubMed ID: 12012340

  • 1. Distributions of beta sheets in proteins with application to structure prediction.
    Ruczinski I, Kooperberg C, Bonneau R, Baker D.
    Proteins; 2002 Jul 01; 48(1):85-97. PubMed ID: 12012340
    [Abstract] [Full Text] [Related]

  • 2. Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions.
    Simons KT, Kooperberg C, Huang E, Baker D.
    J Mol Biol; 1997 Apr 25; 268(1):209-25. PubMed ID: 9149153
    [Abstract] [Full Text] [Related]

  • 3. Ab initio prediction of protein structure using LINUS.
    Srinivasan R, Rose GD.
    Proteins; 2002 Jun 01; 47(4):489-95. PubMed ID: 12001227
    [Abstract] [Full Text] [Related]

  • 4. Folding in lipid membranes (FILM): a novel method for the prediction of small membrane protein 3D structures.
    Pellegrini-Calace M, Carotti A, Jones DT.
    Proteins; 2003 Mar 01; 50(4):537-45. PubMed ID: 12577259
    [Abstract] [Full Text] [Related]

  • 5. A new protein folding algorithm based on hydrophobic compactness: Rigid Unconnected Secondary Structure Iterative Assembly (RUSSIA). I: Methodology.
    Znamenskiy D, Chomilier J, Le Tuan K, Mornon JP.
    Protein Eng; 2003 Dec 01; 16(12):925-35. PubMed ID: 14983072
    [Abstract] [Full Text] [Related]

  • 6. Rapid knot detection and application to protein structure prediction.
    Khatib F, Weirauch MT, Rohl CA.
    Bioinformatics; 2006 Jul 15; 22(14):e252-9. PubMed ID: 16873480
    [Abstract] [Full Text] [Related]

  • 7. Development of an ab initio protein structure prediction system ABLE.
    Ishida T, Nishimura T, Nozaki M, Inoue T, Terada T, Nakamura S, Shimizu K.
    Genome Inform; 2003 Jul 15; 14():228-37. PubMed ID: 15706537
    [Abstract] [Full Text] [Related]

  • 8. Pairwise covariance adds little to secondary structure prediction but improves the prediction of non-canonical local structure.
    Bystroff C, Webb-Robertson BJ.
    BMC Bioinformatics; 2008 Oct 10; 9():429. PubMed ID: 18847485
    [Abstract] [Full Text] [Related]

  • 9. A new protein folding algorithm based on hydrophobic compactness: Rigid Unconnected Secondary Structure Iterative Assembly (RUSSIA). II: Applications.
    Znamenskiy D, Le Tuan K, Mornon JP, Chomilier J.
    Protein Eng; 2003 Dec 10; 16(12):937-48. PubMed ID: 14983073
    [Abstract] [Full Text] [Related]

  • 10. Lattices for ab initio protein structure prediction.
    Pierri CL, De Grassi A, Turi A.
    Proteins; 2008 Nov 01; 73(2):351-61. PubMed ID: 18433064
    [Abstract] [Full Text] [Related]

  • 11. Protein backbone angle prediction with machine learning approaches.
    Kuang R, Leslie CS, Yang AS.
    Bioinformatics; 2004 Jul 10; 20(10):1612-21. PubMed ID: 14988121
    [Abstract] [Full Text] [Related]

  • 12. The anatomy of protein beta-sheet topology.
    Zhang C, Kim SH.
    J Mol Biol; 2000 Jun 16; 299(4):1075-89. PubMed ID: 10843859
    [Abstract] [Full Text] [Related]

  • 13. A neural network method for prediction of beta-turn types in proteins using evolutionary information.
    Kaur H, Raghava GP.
    Bioinformatics; 2004 Nov 01; 20(16):2751-8. PubMed ID: 15145798
    [Abstract] [Full Text] [Related]

  • 14. A coarse-grained Langevin molecular dynamics approach to de novo protein structure prediction.
    Sasaki TN, Cetin H, Sasai M.
    Biochem Biophys Res Commun; 2008 May 02; 369(2):500-6. PubMed ID: 18294960
    [Abstract] [Full Text] [Related]

  • 15. Strand-loop-strand motifs: prediction of hairpins and diverging turns in proteins.
    Kuhn M, Meiler J, Baker D.
    Proteins; 2004 Feb 01; 54(2):282-8. PubMed ID: 14696190
    [Abstract] [Full Text] [Related]

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