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Journal Abstract Search

423 related items for PubMed ID: 12054769

  • 21. Genome-wide decoding of hierarchical modular structure of transcriptional regulation by cis-element and expression clustering.
    Leyfer D, Weng Z.
    Bioinformatics; 2005 Sep 01; 21 Suppl 2():ii197-203. PubMed ID: 16204103
    [Abstract] [Full Text] [Related]

  • 22. Properly defining the targets of a transcription factor significantly improves the computational identification of cooperative transcription factor pairs in yeast.
    Wu WS, Lai FJ.
    BMC Genomics; 2015 Sep 01; 16 Suppl 12(Suppl 12):S10. PubMed ID: 26679776
    [Abstract] [Full Text] [Related]

  • 23. Computational inference of transcriptional regulatory networks from expression profiling and transcription factor binding site identification.
    Haverty PM, Hansen U, Weng Z.
    Nucleic Acids Res; 2004 Sep 01; 32(1):179-88. PubMed ID: 14704355
    [Abstract] [Full Text] [Related]

  • 24. Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data.
    Gao F, Foat BC, Bussemaker HJ.
    BMC Bioinformatics; 2004 Mar 18; 5():31. PubMed ID: 15113405
    [Abstract] [Full Text] [Related]

  • 25. An efficient algorithm to identify coordinately activated transcription factors.
    Hu H.
    Genomics; 2010 Mar 18; 95(3):143-50. PubMed ID: 20060041
    [Abstract] [Full Text] [Related]

  • 26. Transcriptional network inference from functional similarity and expression data: a global supervised approach.
    Ambroise J, Robert A, Macq B, Gala JL.
    Stat Appl Genet Mol Biol; 2012 Jan 06; 11(1):Article 2. PubMed ID: 22499684
    [Abstract] [Full Text] [Related]

  • 27. Identification of sparsely distributed clusters of cis-regulatory elements in sets of co-expressed genes.
    Kreiman G.
    Nucleic Acids Res; 2004 Jan 06; 32(9):2889-900. PubMed ID: 15155858
    [Abstract] [Full Text] [Related]

  • 28. Analysis of the association between transcription factor binding site variants and distinct accompanying regulatory motifs in yeast.
    Chiang S, Swamy KB, Hsu TW, Tsai ZT, Lu HH, Wang D, Tsai HK.
    Gene; 2012 Jan 10; 491(2):237-45. PubMed ID: 21963994
    [Abstract] [Full Text] [Related]

  • 29. Understanding the transcriptional regulation of cervix cancer using microarray gene expression data and promoter sequence analysis of a curated gene set.
    Srivastava P, Mangal M, Agarwal SM.
    Gene; 2014 Feb 10; 535(2):233-8. PubMed ID: 24291025
    [Abstract] [Full Text] [Related]

  • 30. Statistical methods for identifying yeast cell cycle transcription factors.
    Tsai HK, Lu HH, Li WH.
    Proc Natl Acad Sci U S A; 2005 Sep 20; 102(38):13532-7. PubMed ID: 16157877
    [Abstract] [Full Text] [Related]

  • 31. Alu elements contain many binding sites for transcription factors and may play a role in regulation of developmental processes.
    Polak P, Domany E.
    BMC Genomics; 2006 Jun 01; 7():133. PubMed ID: 16740159
    [Abstract] [Full Text] [Related]

  • 32. Identifying combinatorial regulation of transcription factors and binding motifs.
    Kato M, Hata N, Banerjee N, Futcher B, Zhang MQ.
    Genome Biol; 2004 Jun 01; 5(8):R56. PubMed ID: 15287978
    [Abstract] [Full Text] [Related]

  • 33. Computational approach towards promoter sequence comparison via TF mapping using a new distance measure.
    Meera A, Rangarajan L, Bhat S.
    Interdiscip Sci; 2011 Mar 01; 3(1):43-9. PubMed ID: 21369887
    [Abstract] [Full Text] [Related]

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  • 36. An overview of the computational analyses and discovery of transcription factor binding sites.
    Ladunga I.
    Methods Mol Biol; 2010 Mar 01; 674():1-22. PubMed ID: 20827582
    [Abstract] [Full Text] [Related]

  • 37. AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.
    Palaniswamy SK, James S, Sun H, Lamb RS, Davuluri RV, Grotewold E.
    Plant Physiol; 2006 Mar 01; 140(3):818-29. PubMed ID: 16524982
    [Abstract] [Full Text] [Related]

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  • 39. A motif co-occurrence approach for genome-wide prediction of transcription-factor-binding sites in Escherichia coli.
    Bulyk ML, McGuire AM, Masuda N, Church GM.
    Genome Res; 2004 Feb 01; 14(2):201-8. PubMed ID: 14762058
    [Abstract] [Full Text] [Related]

  • 40. High-resolution DNA-binding specificity analysis of yeast transcription factors.
    Zhu C, Byers KJ, McCord RP, Shi Z, Berger MF, Newburger DE, Saulrieta K, Smith Z, Shah MV, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A, Murthy T, Labaer J, Bulyk ML.
    Genome Res; 2009 Apr 01; 19(4):556-66. PubMed ID: 19158363
    [Abstract] [Full Text] [Related]

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