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Journal Abstract Search
311 related items for PubMed ID: 12112677
1. Monte Carlo simulations of the peptide recognition at the consensus binding site of the constant fragment of human immunoglobulin G: the energy landscape analysis of a hot spot at the intermolecular interface. Verkhivker GM, Bouzida D, Gehlhaar DK, Rejto PA, Freer ST, Rose PW. Proteins; 2002 Aug 15; 48(3):539-57. PubMed ID: 12112677 [Abstract] [Full Text] [Related]
2. Computational detection of the binding-site hot spot at the remodeled human growth hormone-receptor interface. Verkhivker GM, Bouzida D, Gehlhaar DK, Rejto PA, Freer ST, Rose PW. Proteins; 2003 Nov 01; 53(2):201-19. PubMed ID: 14517972 [Abstract] [Full Text] [Related]
3. Molecular modeling of protein A affinity chromatography. Salvalaglio M, Zamolo L, Busini V, Moscatelli D, Cavallotti C. J Chromatogr A; 2009 Dec 11; 1216(50):8678-86. PubMed ID: 19423117 [Abstract] [Full Text] [Related]
4. Dissection of binding interactions in the complex between the anti-lysozyme antibody HyHEL-63 and its antigen. Li Y, Urrutia M, Smith-Gill SJ, Mariuzza RA. Biochemistry; 2003 Jan 14; 42(1):11-22. PubMed ID: 12515535 [Abstract] [Full Text] [Related]
5. Towards understanding the mechanisms of molecular recognition by computer simulations of ligand-protein interactions. Verkhivker GM, Rejto PA, Bouzida D, Arthurs S, Colson AB, Freer ST, Gehlhaar DK, Larson V, Luty BA, Marrone T, Rose PW. J Mol Recognit; 1999 Jan 14; 12(6):371-89. PubMed ID: 10611647 [Abstract] [Full Text] [Related]
6. Computational analysis of ligand binding dynamics at the intermolecular hot spots with the aid of simulated tempering and binding free energy calculations. Verkhivker GM. J Mol Graph Model; 2004 May 14; 22(5):335-48. PubMed ID: 15099830 [Abstract] [Full Text] [Related]
7. Unraveling the importance of protein-protein interaction: application of a computational alanine-scanning mutagenesis to the study of the IgG1 streptococcal protein G (C2 fragment) complex. Moreira IS, Fernandes PA, Ramos MJ. J Phys Chem B; 2006 Jun 08; 110(22):10962-9. PubMed ID: 16771349 [Abstract] [Full Text] [Related]
8. Monte Carlo simulation of protein folding in the presence of residue-specific binding sites. Rossinsky E, Srebnik S. Biopolymers; 2005 Dec 05; 79(5):259-68. PubMed ID: 16134169 [Abstract] [Full Text] [Related]
9. Hot regions in protein--protein interactions: the organization and contribution of structurally conserved hot spot residues. Keskin O, Ma B, Nussinov R. J Mol Biol; 2005 Feb 04; 345(5):1281-94. PubMed ID: 15644221 [Abstract] [Full Text] [Related]
10. A binding free energy hot spot in the ankyrin repeat protein GABPbeta mediated protein-protein interaction. Desrosiers DC, Peng ZY. J Mol Biol; 2005 Nov 25; 354(2):375-84. PubMed ID: 16243355 [Abstract] [Full Text] [Related]
11. Structural characterization of a Protein A mimetic peptide dendrimer bound to human IgG. Moiani D, Salvalaglio M, Cavallotti C, Bujacz A, Redzynia I, Bujacz G, Dinon F, Pengo P, Fassina G. J Phys Chem B; 2009 Dec 17; 113(50):16268-75. PubMed ID: 19924842 [Abstract] [Full Text] [Related]
12. Structural mining: self-consistent design on flexible protein-peptide docking and transferable binding affinity potential. Liu Z, Dominy BN, Shakhnovich EI. J Am Chem Soc; 2004 Jul 14; 126(27):8515-28. PubMed ID: 15238009 [Abstract] [Full Text] [Related]
13. Protein-protein interaction regulates proteins' mechanical stability. Cao Y, Yoo T, Zhuang S, Li H. J Mol Biol; 2008 May 16; 378(5):1132-41. PubMed ID: 18433770 [Abstract] [Full Text] [Related]
14. Molecular dynamics-solvated interaction energy studies of protein-protein interactions: the MP1-p14 scaffolding complex. Cui Q, Sulea T, Schrag JD, Munger C, Hung MN, Naïm M, Cygler M, Purisima EO. J Mol Biol; 2008 Jun 13; 379(4):787-802. PubMed ID: 18479705 [Abstract] [Full Text] [Related]
15. Hot spot occlusion from bulk water: a comprehensive study of the complex between the lysozyme HEL and the antibody FVD1.3. Moreira IS, Fernandes PA, Ramos MJ. J Phys Chem B; 2007 Mar 15; 111(10):2697-706. PubMed ID: 17315919 [Abstract] [Full Text] [Related]
16. Molecular insight into pseudolysin inhibition using the MM-PBSA and LIE methods. Adekoya OA, Willassen NP, Sylte I. J Struct Biol; 2006 Feb 15; 153(2):129-44. PubMed ID: 16376106 [Abstract] [Full Text] [Related]
17. Dissection of the protein G B1 domain binding site for human IgG Fc fragment. Sloan DJ, Hellinga HW. Protein Sci; 1999 Aug 15; 8(8):1643-8. PubMed ID: 10452608 [Abstract] [Full Text] [Related]
18. Role of proximal His93 in nitric oxide binding to metmyoglobin. Application of continuum solvation in Monte Carlo protein simulations. Keserü GM, Menyhárd DK. Biochemistry; 1999 May 18; 38(20):6614-22. PubMed ID: 10350480 [Abstract] [Full Text] [Related]
19. Incorporating receptor flexibility in the molecular design of protein interfaces. Li L, Liang S, Pilcher MM, Meroueh SO. Protein Eng Des Sel; 2009 Sep 18; 22(9):575-86. PubMed ID: 19643976 [Abstract] [Full Text] [Related]
20. A refined model of the thyrotropin-releasing hormone (TRH) receptor binding pocket. Novel mixed mode Monte Carlo/stochastic dynamics simulations of the complex between TRH and TRH receptor. Laakkonen LJ, Guarnieri F, Perlman JH, Gershengorn MC, Osman R. Biochemistry; 1996 Jun 18; 35(24):7651-63. PubMed ID: 8672466 [Abstract] [Full Text] [Related] Page: [Next] [New Search]