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Journal Abstract Search

461 related items for PubMed ID: 12112706

  • 1. Distinguishing native conformations of proteins from decoys with an effective free energy estimator based on the OPLS all-atom force field and the Surface Generalized Born solvent model.
    Felts AK, Gallicchio E, Wallqvist A, Levy RM.
    Proteins; 2002 Aug 01; 48(2):404-22. PubMed ID: 12112706
    [Abstract] [Full Text] [Related]

  • 2. Identifying native-like protein structures using physics-based potentials.
    Dominy BN, Brooks CL.
    J Comput Chem; 2002 Jan 15; 23(1):147-60. PubMed ID: 11913380
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  • 3. Distinguish protein decoys by using a scoring function based on a new AMBER force field, short molecular dynamics simulations, and the generalized born solvent model.
    Lee MC, Duan Y.
    Proteins; 2004 May 15; 55(3):620-34. PubMed ID: 15103626
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  • 4. How well can we predict native contacts in proteins based on decoy structures and their energies?
    Zhu J, Zhu Q, Shi Y, Liu H.
    Proteins; 2003 Sep 01; 52(4):598-608. PubMed ID: 12910459
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  • 5. Hydrophobic potential of mean force as a solvation function for protein structure prediction.
    Lin MS, Fawzi NL, Head-Gordon T.
    Structure; 2007 Jun 01; 15(6):727-40. PubMed ID: 17562319
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  • 6. Physical scoring function based on AMBER force field and Poisson-Boltzmann implicit solvent for protein structure prediction.
    Hsieh MJ, Luo R.
    Proteins; 2004 Aug 15; 56(3):475-86. PubMed ID: 15229881
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  • 7. Can a physics-based, all-atom potential find a protein's native structure among misfolded structures? I. Large scale AMBER benchmarking.
    Wroblewska L, Skolnick J.
    J Comput Chem; 2007 Sep 15; 28(12):2059-66. PubMed ID: 17407093
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  • 15. ProVal: a protein-scoring function for the selection of native and near-native folds.
    Berglund A, Head RD, Welsh EA, Marshall GR.
    Proteins; 2004 Feb 01; 54(2):289-302. PubMed ID: 14696191
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  • 19. A model of local-minima distribution on conformational space and its application to protein structure prediction.
    Li H.
    Proteins; 2006 Sep 01; 64(4):985-91. PubMed ID: 16838344
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  • 20. Protein refolding in silico with atom-based statistical potentials and conformational search using a simple genetic algorithm.
    Fang Q, Shortle D.
    J Mol Biol; 2006 Jun 23; 359(5):1456-67. PubMed ID: 16678202
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