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139 related items for PubMed ID: 12136137

  • 1. Domain closure and action of uracil DNA glycosylase (UDG): structures of new crystal forms containing the Escherichia coli enzyme and a comparative study of the known structures involving UDG.
    Saikrishnan K, Bidya Sagar M, Ravishankar R, Roy S, Purnapatre K, Handa P, Varshney U, Vijayan M.
    Acta Crystallogr D Biol Crystallogr; 2002 Aug; 58(Pt 8):1269-76. PubMed ID: 12136137
    [Abstract] [Full Text] [Related]

  • 2. Protein mimicry of DNA from crystal structures of the uracil-DNA glycosylase inhibitor protein and its complex with Escherichia coli uracil-DNA glycosylase.
    Putnam CD, Shroyer MJ, Lundquist AJ, Mol CD, Arvai AS, Mosbaugh DW, Tainer JA.
    J Mol Biol; 1999 Mar 26; 287(2):331-46. PubMed ID: 10080896
    [Abstract] [Full Text] [Related]

  • 3. X-ray analysis of a complex of Escherichia coli uracil DNA glycosylase (EcUDG) with a proteinaceous inhibitor. The structure elucidation of a prokaryotic UDG.
    Ravishankar R, Bidya Sagar M, Roy S, Purnapatre K, Handa P, Varshney U, Vijayan M.
    Nucleic Acids Res; 1998 Nov 01; 26(21):4880-7. PubMed ID: 9776748
    [Abstract] [Full Text] [Related]

  • 4. Crystal structure of Escherichia coli uracil DNA glycosylase and its complexes with uracil and glycerol: structure and glycosylase mechanism revisited.
    Xiao G, Tordova M, Jagadeesh J, Drohat AC, Stivers JT, Gilliland GL.
    Proteins; 1999 Apr 01; 35(1):13-24. PubMed ID: 10090282
    [Abstract] [Full Text] [Related]

  • 5. Mutational analysis of the uracil DNA glycosylase inhibitor protein and its interaction with Escherichia coli uracil DNA glycosylase.
    Acharya N, Roy S, Varshney U.
    J Mol Biol; 2002 Aug 23; 321(4):579-90. PubMed ID: 12206774
    [Abstract] [Full Text] [Related]

  • 6. Complexes of the uracil-DNA glycosylase inhibitor protein, Ugi, with Mycobacterium smegmatis and Mycobacterium tuberculosis uracil-DNA glycosylases.
    Acharya N, Kumar P, Varshney U.
    Microbiology (Reading); 2003 Jul 23; 149(Pt 7):1647-1658. PubMed ID: 12855717
    [Abstract] [Full Text] [Related]

  • 7. Kinetic mechanism of damage site recognition and uracil flipping by Escherichia coli uracil DNA glycosylase.
    Stivers JT, Pankiewicz KW, Watanabe KA.
    Biochemistry; 1999 Jan 19; 38(3):952-63. PubMed ID: 9893991
    [Abstract] [Full Text] [Related]

  • 8. Crystal structure of human uracil-DNA glycosylase in complex with a protein inhibitor: protein mimicry of DNA.
    Mol CD, Arvai AS, Sanderson RJ, Slupphaug G, Kavli B, Krokan HE, Mosbaugh DW, Tainer JA.
    Cell; 1995 Sep 08; 82(5):701-8. PubMed ID: 7671300
    [Abstract] [Full Text] [Related]

  • 9. The role of leucine 191 of Escherichia coli uracil DNA glycosylase in the formation of a highly stable complex with the substrate mimic, ugi, and in uracil excision from the synthetic substrates.
    Handa P, Roy S, Varshney U.
    J Biol Chem; 2001 May 18; 276(20):17324-31. PubMed ID: 11278852
    [Abstract] [Full Text] [Related]

  • 10. Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA.
    Parikh SS, Mol CD, Slupphaug G, Bharati S, Krokan HE, Tainer JA.
    EMBO J; 1998 Sep 01; 17(17):5214-26. PubMed ID: 9724657
    [Abstract] [Full Text] [Related]

  • 11. Raman spectroscopy of uracil DNA glycosylase-DNA complexes: insights into DNA damage recognition and catalysis.
    Dong J, Drohat AC, Stivers JT, Pankiewicz KW, Carey PR.
    Biochemistry; 2000 Oct 31; 39(43):13241-50. PubMed ID: 11052677
    [Abstract] [Full Text] [Related]

  • 12. Role of DNA definite structural elements in interaction with repair enzyme uracil-DNA glycosylase.
    Kubareva EA, Vasilenko NL, Vorobjeva OV, Volkov EM, Oretskaya TS, Korshunova GA, Nevinsky GA.
    Biochem Mol Biol Int; 1998 Oct 31; 46(3):597-606. PubMed ID: 9818099
    [Abstract] [Full Text] [Related]

  • 13. Crystal structure and mutational analysis of human uracil-DNA glycosylase: structural basis for specificity and catalysis.
    Mol CD, Arvai AS, Slupphaug G, Kavli B, Alseth I, Krokan HE, Tainer JA.
    Cell; 1995 Mar 24; 80(6):869-78. PubMed ID: 7697717
    [Abstract] [Full Text] [Related]

  • 14. Chimeras between single-stranded DNA-binding proteins from Escherichia coli and Mycobacterium tuberculosis reveal that their C-terminal domains interact with uracil DNA glycosylases.
    Handa P, Acharya N, Varshney U.
    J Biol Chem; 2001 May 18; 276(20):16992-7. PubMed ID: 11279060
    [Abstract] [Full Text] [Related]

  • 15. Heteronuclear NMR and crystallographic studies of wild-type and H187Q Escherichia coli uracil DNA glycosylase: electrophilic catalysis of uracil expulsion by a neutral histidine 187.
    Drohat AC, Xiao G, Tordova M, Jagadeesh J, Pankiewicz KW, Watanabe KA, Gilliland GL, Stivers JT.
    Biochemistry; 1999 Sep 14; 38(37):11876-86. PubMed ID: 10508390
    [Abstract] [Full Text] [Related]

  • 16. A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA.
    Slupphaug G, Mol CD, Kavli B, Arvai AS, Krokan HE, Tainer JA.
    Nature; 1996 Nov 07; 384(6604):87-92. PubMed ID: 8900285
    [Abstract] [Full Text] [Related]

  • 17. Stressing-out DNA? The contribution of serine-phosphodiester interactions in catalysis by uracil DNA glycosylase.
    Werner RM, Jiang YL, Gordley RG, Jagadeesh GJ, Ladner JE, Xiao G, Tordova M, Gilliland GL, Stivers JT.
    Biochemistry; 2000 Oct 17; 39(41):12585-94. PubMed ID: 11027138
    [Abstract] [Full Text] [Related]

  • 18. Role of electrophilic and general base catalysis in the mechanism of Escherichia coli uracil DNA glycosylase.
    Drohat AC, Jagadeesh J, Ferguson E, Stivers JT.
    Biochemistry; 1999 Sep 14; 38(37):11866-75. PubMed ID: 10508389
    [Abstract] [Full Text] [Related]

  • 19. Role of DNA flexibility in sequence-dependent activity of uracil DNA glycosylase.
    Seibert E, Ross JB, Osman R.
    Biochemistry; 2002 Sep 10; 41(36):10976-84. PubMed ID: 12206669
    [Abstract] [Full Text] [Related]

  • 20. Crystal structure of a G:T/U mismatch-specific DNA glycosylase: mismatch recognition by complementary-strand interactions.
    Barrett TE, Savva R, Panayotou G, Barlow T, Brown T, Jiricny J, Pearl LH.
    Cell; 1998 Jan 09; 92(1):117-29. PubMed ID: 9489705
    [Abstract] [Full Text] [Related]

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