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Journal Abstract Search

453 related items for PubMed ID: 12214315

  • 1. Hydration structure of human lysozyme investigated by molecular dynamics simulation and cryogenic X-ray crystal structure analyses: on the correlation between crystal water sites, solvent density, and solvent dipole.
    Higo J, Nakasako M.
    J Comput Chem; 2002 Nov 15; 23(14):1323-36. PubMed ID: 12214315
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  • 3. Large-scale networks of hydration water molecules around bovine beta-trypsin revealed by cryogenic X-ray crystal structure analysis.
    Nakasako M.
    J Mol Biol; 1999 Jun 11; 289(3):547-64. PubMed ID: 10356328
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  • 4. An evaluation of implicit and explicit solvent model systems for the molecular dynamics simulation of bacteriophage T4 lysozyme.
    Arnold GE, Ornstein RL.
    Proteins; 1994 Jan 11; 18(1):19-33. PubMed ID: 8146120
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  • 5. Extracting hydration sites around proteins from explicit water simulations.
    Henchman RH, McCammon JA.
    J Comput Chem; 2002 Jul 15; 23(9):861-9. PubMed ID: 11984847
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  • 6. Large-scale networks of hydration water molecules around proteins investigated by cryogenic X-ray crystallography.
    Nakasako M.
    Cell Mol Biol (Noisy-le-grand); 2001 Jul 15; 47(5):767-90. PubMed ID: 11728092
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  • 9. Distribution function implied dynamics versus residence times and correlations: solvation shells of myoglobin.
    Lounnas V, Pettitt BM.
    Proteins; 1994 Feb 15; 18(2):148-60. PubMed ID: 8159664
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  • 11. Molecular dynamics simulations for water and ions in protein crystals.
    Hu Z, Jiang J.
    Langmuir; 2008 Apr 15; 24(8):4215-23. PubMed ID: 18318554
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  • 13. Prediction of hydration structures around hydrophilic surfaces of proteins by using the empirical hydration distribution functions from a database analysis.
    Matsuoka D, Nakasako M.
    J Phys Chem B; 2010 Apr 08; 114(13):4652-63. PubMed ID: 20201497
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  • 14. Continuum electrostatic analysis of preferred solvation sites around proteins in solution.
    Dennis S, Camacho CJ, Vajda S.
    Proteins; 2000 Feb 01; 38(2):176-88. PubMed ID: 10656264
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  • 15. Water in hydrated orthorhombic lysozyme crystal: Insight from atomistic simulations.
    Hu Z, Jiang J, Sandler SI.
    J Chem Phys; 2008 Aug 21; 129(7):075105. PubMed ID: 19044806
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  • 16. Acceptable protein and solvent behavior in primary hydration shell simulations of hen lysozyme.
    Hamaneh MB, Buck M.
    Biophys J; 2007 Apr 01; 92(7):L49-51. PubMed ID: 17259273
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  • 17. Collective solvent flows around a protein investigated by molecular dynamics simulation.
    Umezawa K, Higo J, Shimotakahara S, Shindo H.
    J Chem Phys; 2007 Jul 28; 127(4):045101. PubMed ID: 17672724
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