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264 related items for PubMed ID: 12360522

  • 1. Influence of solvent molecules on the stereochemical code of glycyl residues in proteins.
    Eswar N, Nagarajaram HA, Ramakrishnan C, Srinivasan N.
    Proteins; 2002 Nov 15; 49(3):326-34. PubMed ID: 12360522
    [Abstract] [Full Text] [Related]

  • 2. Stereochemical punctuation marks in protein structures: glycine and proline containing helix stop signals.
    Gunasekaran K, Nagarajaram HA, Ramakrishnan C, Balaram P.
    J Mol Biol; 1998 Feb 06; 275(5):917-32. PubMed ID: 9480777
    [Abstract] [Full Text] [Related]

  • 3. A survey of left-handed polyproline II helices.
    Stapley BJ, Creamer TP.
    Protein Sci; 1999 Mar 06; 8(3):587-95. PubMed ID: 10091661
    [Abstract] [Full Text] [Related]

  • 4. An observation of non-superimposable stereogeometrical features in a non-chiral one-component beta-Ala model peptide.
    Bhadbhade MM, Kishore R.
    Biochem Biophys Res Commun; 2004 Apr 16; 316(4):1029-36. PubMed ID: 15044088
    [Abstract] [Full Text] [Related]

  • 5. Left-handed polyproline II helices commonly occur in globular proteins.
    Adzhubei AA, Sternberg MJ.
    J Mol Biol; 1993 Jan 20; 229(2):472-93. PubMed ID: 8429558
    [Abstract] [Full Text] [Related]

  • 6. Analysis of main chain torsion angles in proteins: prediction of NMR coupling constants for native and random coil conformations.
    Smith LJ, Bolin KA, Schwalbe H, MacArthur MW, Thornton JM, Dobson CM.
    J Mol Biol; 1996 Jan 26; 255(3):494-506. PubMed ID: 8568893
    [Abstract] [Full Text] [Related]

  • 7. Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms.
    Word JM, Lovell SC, LaBean TH, Taylor HC, Zalis ME, Presley BK, Richardson JS, Richardson DC.
    J Mol Biol; 1999 Jan 29; 285(4):1711-33. PubMed ID: 9917407
    [Abstract] [Full Text] [Related]

  • 8. Structure determination of a peptide model of the repeated helical domain in Samia cynthia ricini silk fibroin before spinning by a combination of advanced solid-state NMR methods.
    Nakazawa Y, Asakura T.
    J Am Chem Soc; 2003 Jun 18; 125(24):7230-7. PubMed ID: 12797796
    [Abstract] [Full Text] [Related]

  • 9. Probing the role of the C-H...O hydrogen bond stabilized polypeptide chain reversal at the C-terminus of designed peptide helices. Structural characterization of three decapeptides.
    Aravinda S, Shamala N, Bandyopadhyay A, Balaram P.
    J Am Chem Soc; 2003 Dec 10; 125(49):15065-75. PubMed ID: 14653741
    [Abstract] [Full Text] [Related]

  • 10. Influence of the environment in the conformation of alpha-helices studied by protein database search and molecular dynamics simulations.
    Olivella M, Deupi X, Govaerts C, Pardo L.
    Biophys J; 2002 Jun 10; 82(6):3207-13. PubMed ID: 12023245
    [Abstract] [Full Text] [Related]

  • 11. Conformation of di-n-propylglycine residues (Dpg) in peptides: crystal structures of a type I' beta-turn forming tetrapeptide and an alpha-helical tetradecapeptide.
    Hegde RP, Aravinda S, Rai R, Kaul R, Vijayalakshmi S, Rao RB, Shamala N, Balaram P.
    J Pept Sci; 2008 May 10; 14(5):648-59. PubMed ID: 18085516
    [Abstract] [Full Text] [Related]

  • 12. Disallowed Ramachandran conformations of amino acid residues in protein structures.
    Gunasekaran K, Ramakrishnan C, Balaram P.
    J Mol Biol; 1996 Nov 22; 264(1):191-8. PubMed ID: 8950277
    [Abstract] [Full Text] [Related]

  • 13. Structure validation by Calpha geometry: phi,psi and Cbeta deviation.
    Lovell SC, Davis IW, Arendall WB, de Bakker PI, Word JM, Prisant MG, Richardson JS, Richardson DC.
    Proteins; 2003 Feb 15; 50(3):437-50. PubMed ID: 12557186
    [Abstract] [Full Text] [Related]

  • 14. Modulation of intrinsic phi,psi propensities of amino acids by neighbouring residues in the coil regions of protein structures: NMR analysis and dissection of a beta-hairpin peptide.
    Griffiths-Jones SR, Sharman GJ, Maynard AJ, Searle MS.
    J Mol Biol; 1998 Dec 18; 284(5):1597-609. PubMed ID: 9878373
    [Abstract] [Full Text] [Related]

  • 15. Molecular dynamics simulations of polypeptide conformations in water: A comparison of alpha, beta, and poly(pro)II conformations.
    Sreerama N, Woody RW.
    Proteins; 1999 Sep 01; 36(4):400-6. PubMed ID: 10450081
    [Abstract] [Full Text] [Related]

  • 16. Comprehensive analysis of the helix-X-helix motif in soluble proteins.
    Deville J, Rey J, Chabbert M.
    Proteins; 2008 Jul 01; 72(1):115-35. PubMed ID: 18214950
    [Abstract] [Full Text] [Related]

  • 17. Ramachandran analysis of conserved glycyl residues in homologous proteins of known structure.
    Lakshmi B, Sinduja C, Archunan G, Srinivasan N.
    Protein Sci; 2014 Jun 01; 23(6):843-50. PubMed ID: 24687432
    [Abstract] [Full Text] [Related]

  • 18. Comparison between the phi distribution of the amino acids in the protein database and NMR data indicates that amino acids have various phi propensities in the random coil conformation.
    Serrano L.
    J Mol Biol; 1995 Nov 24; 254(2):322-33. PubMed ID: 7490751
    [Abstract] [Full Text] [Related]

  • 19. Flexibility of "polyunsaturated fatty acid chains" and peptide backbones: A comparative ab initio study.
    Law JM, Setiadi DH, Chass GA, Csizmadia IG, Viskolcz B.
    J Phys Chem A; 2005 Jan 27; 109(3):520-33. PubMed ID: 16833374
    [Abstract] [Full Text] [Related]

  • 20. Statistical and molecular dynamics studies of buried waters in globular proteins.
    Park S, Saven JG.
    Proteins; 2005 Aug 15; 60(3):450-63. PubMed ID: 15937899
    [Abstract] [Full Text] [Related]

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