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Journal Abstract Search

363 related items for PubMed ID: 12471600

  • 1. Ion permeation through the gramicidin channel: atomically detailed modeling by the Stochastic Difference Equation.
    Siva K, Elber R.
    Proteins; 2003 Jan 01; 50(1):63-80. PubMed ID: 12471600
    [Abstract] [Full Text] [Related]

  • 2. Using theory and simulation to understand permeation and selectivity in ion channels.
    Jakobsson E.
    Methods; 1998 Mar 01; 14(3):342-51. PubMed ID: 9571089
    [Abstract] [Full Text] [Related]

  • 3. Energetics of K+ permeability through Gramicidin A by forward-reverse steered molecular dynamics.
    De Fabritiis G, Coveney PV, Villà-Freixa J.
    Proteins; 2008 Oct 01; 73(1):185-94. PubMed ID: 18412256
    [Abstract] [Full Text] [Related]

  • 4. The role of the dielectric barrier in narrow biological channels: a novel composite approach to modeling single-channel currents.
    Mamonov AB, Coalson RD, Nitzan A, Kurnikova MG.
    Biophys J; 2003 Jun 01; 84(6):3646-61. PubMed ID: 12770873
    [Abstract] [Full Text] [Related]

  • 5. Framework models of ion permeation through membrane channels and the generalized King-Altman method.
    Mapes EJ, Schumaker MF.
    Bull Math Biol; 2006 Oct 01; 68(7):1429-60. PubMed ID: 16868853
    [Abstract] [Full Text] [Related]

  • 6. Generalized Langevin models of molecular dynamics simulations with applications to ion channels.
    Gordon D, Krishnamurthy V, Chung SH.
    J Chem Phys; 2009 Oct 07; 131(13):134102. PubMed ID: 19814538
    [Abstract] [Full Text] [Related]

  • 7. Realistic simulations of proton transport along the gramicidin channel: demonstrating the importance of solvation effects.
    Braun-Sand S, Burykin A, Chu ZT, Warshel A.
    J Phys Chem B; 2005 Jan 13; 109(1):583-92. PubMed ID: 16851050
    [Abstract] [Full Text] [Related]

  • 8. Noncontact dipole effects on channel permeation. VI. 5F- and 6F-Trp gramicidin channel currents.
    Cole CD, Frost AS, Thompson N, Cotten M, Cross TA, Busath DD.
    Biophys J; 2002 Oct 13; 83(4):1974-86. PubMed ID: 12324416
    [Abstract] [Full Text] [Related]

  • 9. Noncontact dipole effects on channel permeation. IV. Kinetic model of 5F-Trp(13) gramicidin A currents.
    Thompson N, Thompson G, Cole CD, Cotten M, Cross TA, Busath DD.
    Biophys J; 2001 Sep 13; 81(3):1245-54. PubMed ID: 11509341
    [Abstract] [Full Text] [Related]

  • 10. Ion transport in the gramicidin channel: molecular dynamics study of single and double occupancy.
    Roux B, Prod'hom B, Karplus M.
    Biophys J; 1995 Mar 13; 68(3):876-92. PubMed ID: 7538804
    [Abstract] [Full Text] [Related]

  • 11. Continuum electrostatics fails to describe ion permeation in the gramicidin channel.
    Edwards S, Corry B, Kuyucak S, Chung SH.
    Biophys J; 2002 Sep 13; 83(3):1348-60. PubMed ID: 12202360
    [Abstract] [Full Text] [Related]

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  • 13. Semi-Markov models for brownian dynamics permeation in biological ion channels.
    Krishnamurthy V, Luk KY.
    IEEE/ACM Trans Comput Biol Bioinform; 2011 Sep 13; 8(1):273-81. PubMed ID: 21071815
    [Abstract] [Full Text] [Related]

  • 14. Stochastic theory of ion movement in channels with single-ion occupancy. Application to sodium permeation of gramicidin channels.
    Jakobsson E, Chiu SW.
    Biophys J; 1987 Jul 13; 52(1):33-45. PubMed ID: 2440492
    [Abstract] [Full Text] [Related]

  • 15. The nature of ion and water barrier crossings in a simulated ion channel.
    Chiu SW, Novotny JA, Jakobsson E.
    Biophys J; 1993 Jan 13; 64(1):98-109. PubMed ID: 7679301
    [Abstract] [Full Text] [Related]

  • 16. Using stochastic models calibrated from nanosecond nonequilibrium simulations to approximate mesoscale information.
    Calderon CP, Janosi L, Kosztin I.
    J Chem Phys; 2009 Apr 14; 130(14):144908. PubMed ID: 19368472
    [Abstract] [Full Text] [Related]

  • 17. Permeation in ion channels: the interplay of structure and theory.
    Miloshevsky GV, Jordan PC.
    Trends Neurosci; 2004 Jun 14; 27(6):308-14. PubMed ID: 15165734
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  • 20. Molecular dynamics simulations of gramicidin A in a lipid bilayer: from structure-function relations to force fields.
    Baştuğ T, Patra SM, Kuyucak S.
    Chem Phys Lipids; 2006 Jun 14; 141(1-2):197-204. PubMed ID: 16600199
    [Abstract] [Full Text] [Related]

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