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Journal Abstract Search

207 related items for PubMed ID: 12824341

  • 1. PSEUDOVIEWER2: Visualization of RNA pseudoknots of any type.
    Han K, Byun Y.
    Nucleic Acids Res; 2003 Jul 01; 31(13):3432-40. PubMed ID: 12824341
    [Abstract] [Full Text] [Related]

  • 2. PseudoViewer: automatic visualization of RNA pseudoknots.
    Han K, Lee Y, Kim W.
    Bioinformatics; 2002 Jul 01; 18 Suppl 1():S321-8. PubMed ID: 12169562
    [Abstract] [Full Text] [Related]

  • 3. PseudoViewer3: generating planar drawings of large-scale RNA structures with pseudoknots.
    Byun Y, Han K.
    Bioinformatics; 2009 Jun 01; 25(11):1435-7. PubMed ID: 19369500
    [Abstract] [Full Text] [Related]

  • 4. An efficient algorithm for planar drawing of RNA structures with pseudoknots of any type.
    Byun Y, Han K.
    J Bioinform Comput Biol; 2016 Jun 01; 14(3):1650009. PubMed ID: 26932273
    [Abstract] [Full Text] [Related]

  • 5. PseudoViewer: web application and web service for visualizing RNA pseudoknots and secondary structures.
    Byun Y, Han K.
    Nucleic Acids Res; 2006 Jul 01; 34(Web Server issue):W416-22. PubMed ID: 16845039
    [Abstract] [Full Text] [Related]

  • 6. jViz.RNA 4.0-Visualizing pseudoknots and RNA editing employing compressed tree graphs.
    Shabash B, Wiese KC.
    PLoS One; 2019 Jul 01; 14(5):e0210281. PubMed ID: 31059508
    [Abstract] [Full Text] [Related]

  • 7. PseudoBase++: an extension of PseudoBase for easy searching, formatting and visualization of pseudoknots.
    Taufer M, Licon A, Araiza R, Mireles D, van Batenburg FH, Gultyaev AP, Leung MY.
    Nucleic Acids Res; 2009 Jan 01; 37(Database issue):D127-35. PubMed ID: 18988624
    [Abstract] [Full Text] [Related]

  • 8. pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows.
    Reeder J, Steffen P, Giegerich R.
    Nucleic Acids Res; 2007 Jul 01; 35(Web Server issue):W320-4. PubMed ID: 17478505
    [Abstract] [Full Text] [Related]

  • 9. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
    Matsui H, Sato K, Sakakibara Y.
    Proc IEEE Comput Syst Bioinform Conf; 2004 Jul 01; ():290-9. PubMed ID: 16448022
    [Abstract] [Full Text] [Related]

  • 10. Heuristic RNA pseudoknot prediction including intramolecular kissing hairpins.
    Sperschneider J, Datta A, Wise MJ.
    RNA; 2011 Jan 01; 17(1):27-38. PubMed ID: 21098139
    [Abstract] [Full Text] [Related]

  • 11. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
    Matsui H, Sato K, Sakakibara Y.
    Bioinformatics; 2005 Jun 01; 21(11):2611-7. PubMed ID: 15784748
    [Abstract] [Full Text] [Related]

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  • 13. RNA pseudoknot prediction in energy-based models.
    Lyngsø RB, Pedersen CN.
    J Comput Biol; 2000 Jun 01; 7(3-4):409-27. PubMed ID: 11108471
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  • 16. ILM: a web server for predicting RNA secondary structures with pseudoknots.
    Ruan J, Stormo GD, Zhang W.
    Nucleic Acids Res; 2004 Jul 01; 32(Web Server issue):W146-9. PubMed ID: 15215368
    [Abstract] [Full Text] [Related]

  • 17. ProbKnot: fast prediction of RNA secondary structure including pseudoknots.
    Bellaousov S, Mathews DH.
    RNA; 2010 Oct 01; 16(10):1870-80. PubMed ID: 20699301
    [Abstract] [Full Text] [Related]

  • 18. RNA Visualization: Relevance and the Current State-of-the-Art Focusing on Pseudoknots.
    Shabash B, Wiese KC.
    IEEE/ACM Trans Comput Biol Bioinform; 2017 Oct 01; 14(3):696-712. PubMed ID: 26915129
    [Abstract] [Full Text] [Related]

  • 19. KnotSeeker: heuristic pseudoknot detection in long RNA sequences.
    Sperschneider J, Datta A.
    RNA; 2008 Apr 01; 14(4):630-40. PubMed ID: 18314500
    [Abstract] [Full Text] [Related]

  • 20. Modular RNA architecture revealed by computational analysis of existing pseudoknots and ribosomal RNAs.
    Pasquali S, Gan HH, Schlick T.
    Nucleic Acids Res; 2005 Apr 01; 33(4):1384-98. PubMed ID: 15745998
    [Abstract] [Full Text] [Related]

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