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313 related items for PubMed ID: 12833266

  • 21. Thermodynamics of folding and association of lattice-model proteins.
    Cellmer T, Bratko D, Prausnitz JM, Blanch H.
    J Chem Phys; 2005 May 01; 122(17):174908. PubMed ID: 15910070
    [Abstract] [Full Text] [Related]

  • 22. The folding of knotted proteins: insights from lattice simulations.
    Faísca PF, Travasso RD, Charters T, Nunes A, Cieplak M.
    Phys Biol; 2010 Feb 03; 7(1):16009. PubMed ID: 20130340
    [Abstract] [Full Text] [Related]

  • 23. Explicit-chain model of native-state hydrogen exchange: implications for event ordering and cooperativity in protein folding.
    Kaya H, Chan HS.
    Proteins; 2005 Jan 01; 58(1):31-44. PubMed ID: 15468168
    [Abstract] [Full Text] [Related]

  • 24. Why do proteins divide into domains? Insights from lattice model simulations.
    Rutkowska A, Kolinski A.
    Biomacromolecules; 2007 Nov 01; 8(11):3519-24. PubMed ID: 17929971
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  • 25. Probing possible downhill folding: native contact topology likely places a significant constraint on the folding cooperativity of proteins with approximately 40 residues.
    Badasyan A, Liu Z, Chan HS.
    J Mol Biol; 2008 Dec 12; 384(2):512-30. PubMed ID: 18823994
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  • 26. On the relation between native geometry and conformational plasticity.
    Faísca PF, Gomes CM.
    Biophys Chem; 2008 Dec 12; 138(3):99-106. PubMed ID: 18823691
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  • 27. Understanding the role of the topology in protein folding by computational inverse folding experiments.
    Mucherino A, Costantini S, di Serafino D, D'Apuzzo M, Facchiano A, Colonna G.
    Comput Biol Chem; 2008 Aug 12; 32(4):233-9. PubMed ID: 18479970
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  • 28. Geometrical model for the native-state folds of proteins.
    Trinh XH, Trovato A, Seno F, Banavar JR, Maritan A.
    Biophys Chem; 2005 Apr 01; 115(2-3):289-94. PubMed ID: 15752620
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  • 29. Studies on protein folding, unfolding and fluctuations by computer simulation. I. The effect of specific amino acid sequence represented by specific inter-unit interactions.
    Taketomi H, Ueda Y, Gō N.
    Int J Pept Protein Res; 1975 Apr 01; 7(6):445-59. PubMed ID: 1201909
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  • 30. Protein translocation through a tunnel induces changes in folding kinetics: a lattice model study.
    Contreras Martínez LM, Martínez-Veracoechea FJ, Pohkarel P, Stroock AD, Escobedo FA, DeLisa MP.
    Biotechnol Bioeng; 2006 May 05; 94(1):105-17. PubMed ID: 16528757
    [Abstract] [Full Text] [Related]

  • 31. Simple two-state protein folding kinetics requires near-levinthal thermodynamic cooperativity.
    Kaya H, Chan HS.
    Proteins; 2003 Sep 01; 52(4):510-23. PubMed ID: 12910451
    [Abstract] [Full Text] [Related]

  • 32. Roles of non-native hydrogen-bonding interaction in helix-coil transition of a single polypeptide as revealed by comparison between Gō-like and non-Gō models.
    Chen Y, Ding J.
    Proteins; 2010 Jul 01; 78(9):2090-100. PubMed ID: 20455265
    [Abstract] [Full Text] [Related]

  • 33. Exploration of compact protein conformations using the guided replication Monte Carlo method.
    Solomon JE, Liney D.
    Biopolymers; 1995 Nov 01; 36(5):579-97. PubMed ID: 7578950
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  • 34. Calculation of protein heat capacity from replica-exchange molecular dynamics simulations with different implicit solvent models.
    Yeh IC, Lee MS, Olson MA.
    J Phys Chem B; 2008 Nov 27; 112(47):15064-73. PubMed ID: 18959439
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  • 35. Folding kinetics of a lattice protein via a forward flux sampling approach.
    Borrero EE, Escobedo FA.
    J Chem Phys; 2006 Oct 28; 125(16):164904. PubMed ID: 17092136
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  • 36. Interplay between native topology and non-native interactions in the folding of tethered proteins.
    Krobath H, Faísca PF.
    Phys Biol; 2013 Feb 28; 10(1):016002. PubMed ID: 23283414
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  • 37. Native geometry and the dynamics of protein folding.
    Faisca PF, Telo da Gama MM.
    Biophys Chem; 2005 Apr 01; 115(2-3):169-75. PubMed ID: 15752600
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  • 38. Different circular permutations produced different folding nuclei in proteins: a computational study.
    Li L, Shakhnovich EI.
    J Mol Biol; 2001 Feb 09; 306(1):121-32. PubMed ID: 11178898
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  • 39. Protein folding: simple models for a complex process.
    Caflisch A.
    Structure; 2004 Oct 09; 12(10):1750-2. PubMed ID: 15458624
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  • 40. All-atom ab initio folding of a diverse set of proteins.
    Yang JS, Chen WW, Skolnick J, Shakhnovich EI.
    Structure; 2007 Jan 09; 15(1):53-63. PubMed ID: 17223532
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