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155 related items for PubMed ID: 12833537

  • 1. Free energy calculations for the relative binding affinity between DNA and lambda-repressor.
    Saito M, Sarai A.
    Proteins; 2003 Aug 01; 52(2):129-36. PubMed ID: 12833537
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  • 3. Empirical free energy calculations of phage 434 repressor- and cro-DNA complexes support the 'indirect readout' hypothesis of specificity.
    Brown LM, Bruccoleri RE, Novotny J.
    Pac Symp Biocomput; 1998 Aug 01; ():339-48. PubMed ID: 9697194
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  • 4. Salt effects on protein-DNA interactions. The lambda cI repressor and EcoRI endonuclease.
    Misra VK, Hecht JL, Sharp KA, Friedman RA, Honig B.
    J Mol Biol; 1994 Apr 29; 238(2):264-80. PubMed ID: 8158653
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  • 5. Computer-aided discrimination between active and inactive mutants of the N-terminal domain of the bacteriophage lambda repressor.
    Kombo DC, Némethy G, Gibson KD, Rackovsky S, Scheraga HA.
    J Mol Biol; 1996 Mar 01; 256(3):517-32. PubMed ID: 8604135
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  • 7. Absolute and relative binding free energy calculations of the interaction of biotin and its analogs with streptavidin using molecular dynamics/free energy perturbation approaches.
    Miyamoto S, Kollman PA.
    Proteins; 1993 Jul 01; 16(3):226-45. PubMed ID: 8346190
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  • 12. Cooperative non-specific DNA binding by octamerizing lambda cI repressors: a site-specific thermodynamic analysis.
    Pray TR, Burz DS, Ackers GK.
    J Mol Biol; 1998 Oct 09; 282(5):947-58. PubMed ID: 9753546
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  • 14. DNA-mediated assembly of weakly interacting DNA-binding protein subunits: in vitro recruitment of phage 434 repressor and yeast GCN4 DNA-binding domains.
    Guarnaccia C, Raman B, Zahariev S, Simoncsits A, Pongor S.
    Nucleic Acids Res; 2004 Oct 09; 32(17):4992-5002. PubMed ID: 15388801
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  • 16. Energy coupling between DNA binding and subunit association is responsible for the specificity of DNA-Arc interaction.
    Silva JL, Silveira CF.
    Protein Sci; 1993 Jun 09; 2(6):945-50. PubMed ID: 8318899
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  • 17. Incorporation of anthraquinonyl group into lambda-Cro repressor protein for strand- and position-specific photocleavage of double-stranded DNA.
    Sasaki H, Ikeda K, Suzuki M, Ninomiya K, Sisido M.
    Biopolymers; 2004 Jun 09; 76(1):21-6. PubMed ID: 14997471
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  • 18. Molecular dynamics simulation reveals sequence-intrinsic and protein-induced geometrical features of the OL1 DNA operator.
    Kombo DC, McConnell KJ, Young MA, Beveridge DL.
    Biopolymers; 2001 Oct 05; 59(4):205-25. PubMed ID: 11473347
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  • 19. One nanosecond molecular dynamics simulation of the N-terminal domain of the lambda repressor protein.
    Kombo DC, Young MA, Beveridge DL.
    Biopolymers; 2000 Jun 05; 53(7):596-605. PubMed ID: 10766954
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  • 20. Tet repressor induction by tetracycline: a molecular dynamics, continuum electrostatics, and crystallographic study.
    Aleksandrov A, Schuldt L, Hinrichs W, Simonson T.
    J Mol Biol; 2008 May 09; 378(4):898-912. PubMed ID: 18395746
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