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Journal Abstract Search

155 related items for PubMed ID: 12833537

  • 21. Operator recognition by the phage 434 cI repressor: MD simulations of free and bound 50-bp DNA reveal important differences between the OR1 and OR2 sites.
    Hartmann B, Sullivan MR, Harris LF.
    Biopolymers; 2003 Feb; 68(2):250-64. PubMed ID: 12548627
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  • 22. A molecular dissection of the interaction between the transcription factor Gata-1 zinc finger and DNA.
    Mott BH, Bassman J, Pikaart MJ.
    Biochem Biophys Res Commun; 2004 Apr 09; 316(3):910-7. PubMed ID: 15033488
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  • 23. Molecular dynamics simulation accurately predicts the experimentally-observed distributions of the (C, N, O) protein atoms around water molecules and sodium ions.
    Kombo DC, Young MA, Beveridge DL.
    Proteins; 2000 May 15; 39(3):212-5. PubMed ID: 10737942
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  • 26. Energetics of sequence-specific protein-DNA association: computational analysis of integrase Tn916 binding to its target DNA.
    Gorfe AA, Jelesarov I.
    Biochemistry; 2003 Oct 14; 42(40):11568-76. PubMed ID: 14529266
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  • 29. Sequestered water and binding energy are coupled in complexes of lambda Cro repressor with non-consensus binding sequences.
    Rau DC.
    J Mol Biol; 2006 Aug 11; 361(2):352-61. PubMed ID: 16828799
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  • 30. Application of the lambda-dynamics method to evaluate the relative binding free energies of inhibitors to HCV protease.
    Guo Z, Durkin J, Fischmann T, Ingram R, Prongay A, Zhang R, Madison V.
    J Med Chem; 2003 Dec 04; 46(25):5360-4. PubMed ID: 14640544
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  • 32. Analysis of the binding energies of testosterone, 5alpha-dihydrotestosterone, androstenedione and dehydroepiandrosterone sulfate with an antitestosterone antibody.
    Nordman N, Valjakka J, Peräkylä M.
    Proteins; 2003 Jan 01; 50(1):135-43. PubMed ID: 12471606
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  • 34. Nonspecific binding of the OR repressors CI and Cro of bacteriophage lambda.
    Bakk A, Metzler R.
    J Theor Biol; 2004 Dec 21; 231(4):525-33. PubMed ID: 15488529
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  • 35. Free energy simulations and MM-PBSA analyses on the affinity and specificity of steroid binding to antiestradiol antibody.
    Laitinen T, Kankare JA, Peräkylä M.
    Proteins; 2004 Apr 01; 55(1):34-43. PubMed ID: 14997538
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  • 37. Investigation of proton transport tautomerism in clusters of protonated nucleic acid bases (cytosine, uracil, thymine, and adenine) and ammonia by high-pressure mass spectrometry and ab initio calculations.
    Wu R, McMahon TB.
    J Am Chem Soc; 2007 Jan 24; 129(3):569-80. PubMed ID: 17227020
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