These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
8. HMM-ModE--improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying emission probabilities with negative training sequences. Srivastava PK, Desai DK, Nandi S, Lynn AM. BMC Bioinformatics; 2007 Mar 27; 8():104. PubMed ID: 17389042 [Abstract] [Full Text] [Related]
9. On single and multiple models of protein families for the detection of remote sequence relationships. Casbon JA, Saqi MA. BMC Bioinformatics; 2006 Jan 31; 7():48. PubMed ID: 16448555 [Abstract] [Full Text] [Related]
11. Protein topology recognition from secondary structure sequences: application of the hidden Markov models to the alpha class proteins. Di Francesco V, Garnier J, Munson PJ. J Mol Biol; 1997 Mar 28; 267(2):446-63. PubMed ID: 9096237 [Abstract] [Full Text] [Related]
12. Simultaneous sequence alignment and tree construction using hidden Markov models. Edgar RC, Sjölander K. Pac Symp Biocomput; 2003 Mar 28; ():180-91. PubMed ID: 12603027 [Abstract] [Full Text] [Related]
18. Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods. Park J, Karplus K, Barrett C, Hughey R, Haussler D, Hubbard T, Chothia C. J Mol Biol; 1998 Dec 11; 284(4):1201-10. PubMed ID: 9837738 [Abstract] [Full Text] [Related]
19. Protein classification based on text document classification techniques. Cheng BY, Carbonell JG, Klein-Seetharaman J. Proteins; 2005 Mar 01; 58(4):955-70. PubMed ID: 15645499 [Abstract] [Full Text] [Related]