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Journal Abstract Search

307 related items for PubMed ID: 12939148

  • 1. Use of 2-aminopurine fluorescence to examine conformational changes during nucleotide incorporation by DNA polymerase I (Klenow fragment).
    Purohit V, Grindley ND, Joyce CM.
    Biochemistry; 2003 Sep 02; 42(34):10200-11. PubMed ID: 12939148
    [Abstract] [Full Text] [Related]

  • 2. Conformational changes during normal and error-prone incorporation of nucleotides by a Y-family DNA polymerase detected by 2-aminopurine fluorescence.
    DeLucia AM, Grindley ND, Joyce CM.
    Biochemistry; 2007 Sep 25; 46(38):10790-803. PubMed ID: 17725324
    [Abstract] [Full Text] [Related]

  • 3. The nucleotide analog 2-aminopurine as a spectroscopic probe of nucleotide incorporation by the Klenow fragment of Escherichia coli polymerase I and bacteriophage T4 DNA polymerase.
    Frey MW, Sowers LC, Millar DP, Benkovic SJ.
    Biochemistry; 1995 Jul 18; 34(28):9185-92. PubMed ID: 7619819
    [Abstract] [Full Text] [Related]

  • 4. DNA polymerase beta: multiple conformational changes in the mechanism of catalysis.
    Zhong X, Patel SS, Werneburg BG, Tsai MD.
    Biochemistry; 1997 Sep 30; 36(39):11891-900. PubMed ID: 9305982
    [Abstract] [Full Text] [Related]

  • 5. Fingers-closing and other rapid conformational changes in DNA polymerase I (Klenow fragment) and their role in nucleotide selectivity.
    Joyce CM, Potapova O, Delucia AM, Huang X, Basu VP, Grindley ND.
    Biochemistry; 2008 Jun 10; 47(23):6103-16. PubMed ID: 18473481
    [Abstract] [Full Text] [Related]

  • 6. Fluorescence of 2-aminopurine reveals rapid conformational changes in the RB69 DNA polymerase-primer/template complexes upon binding and incorporation of matched deoxynucleoside triphosphates.
    Zhang H, Cao W, Zakharova E, Konigsberg W, De La Cruz EM.
    Nucleic Acids Res; 2007 Jun 10; 35(18):6052-62. PubMed ID: 17766250
    [Abstract] [Full Text] [Related]

  • 7. Conformational dynamics of DNA polymerase probed with a novel fluorescent DNA base analogue.
    Stengel G, Gill JP, Sandin P, Wilhelmsson LM, Albinsson B, Nordén B, Millar D.
    Biochemistry; 2007 Oct 30; 46(43):12289-97. PubMed ID: 17915941
    [Abstract] [Full Text] [Related]

  • 8. Interaction of DNA polymerase I (Klenow fragment) with DNA substrates containing extrahelical bases: implications for proofreading of frameshift errors during DNA synthesis.
    Lam WC, Van der Schans EJ, Sowers LC, Millar DP.
    Biochemistry; 1999 Mar 02; 38(9):2661-8. PubMed ID: 10052936
    [Abstract] [Full Text] [Related]

  • 9. Significance of the O-helix residues of Escherichia coli DNA polymerase I in DNA synthesis: dynamics of the dNTP binding pocket.
    Kaushik N, Pandey VN, Modak MJ.
    Biochemistry; 1996 Jun 04; 35(22):7256-66. PubMed ID: 8679555
    [Abstract] [Full Text] [Related]

  • 10. Using 2-aminopurine fluorescence to detect bacteriophage T4 DNA polymerase-DNA complexes that are important for primer extension and proofreading reactions.
    Hariharan C, Reha-Krantz LJ.
    Biochemistry; 2005 Dec 06; 44(48):15674-84. PubMed ID: 16313170
    [Abstract] [Full Text] [Related]

  • 11. How E. coli DNA polymerase I (Klenow fragment) distinguishes between deoxy- and dideoxynucleotides.
    Astatke M, Grindley ND, Joyce CM.
    J Mol Biol; 1998 Apr 24; 278(1):147-65. PubMed ID: 9571040
    [Abstract] [Full Text] [Related]

  • 12. Probing DNA polymerase-DNA interactions: examining the template strand in exonuclease complexes using 2-aminopurine fluorescence and acrylamide quenching.
    Tleugabulova D, Reha-Krantz LJ.
    Biochemistry; 2007 Jun 05; 46(22):6559-69. PubMed ID: 17497891
    [Abstract] [Full Text] [Related]

  • 13. Recognition of sequence-directed DNA structure by the Klenow fragment of DNA polymerase I.
    Carver TE, Millar DP.
    Biochemistry; 1998 Feb 17; 37(7):1898-904. PubMed ID: 9485315
    [Abstract] [Full Text] [Related]

  • 14. Klenow fragment-DNA interaction required for the incorporation of nucleotides opposite guanine and O6-methylguanine.
    Spratt TE.
    Biochemistry; 1997 Oct 28; 36(43):13292-7. PubMed ID: 9341220
    [Abstract] [Full Text] [Related]

  • 15. Influence of 5'-nearest neighbors on the insertion kinetics of the fluorescent nucleotide analog 2-aminopurine by Klenow fragment.
    Bloom LB, Otto MR, Beechem JM, Goodman MF.
    Biochemistry; 1993 Oct 19; 32(41):11247-58. PubMed ID: 8218190
    [Abstract] [Full Text] [Related]

  • 16. Use of 2-aminopurine and tryptophan fluorescence as probes in kinetic analyses of DNA polymerase beta.
    Dunlap CA, Tsai MD.
    Biochemistry; 2002 Sep 17; 41(37):11226-35. PubMed ID: 12220188
    [Abstract] [Full Text] [Related]

  • 17. DNA polymerase beta: pre-steady-state kinetic analysis and roles of arginine-283 in catalysis and fidelity.
    Werneburg BG, Ahn J, Zhong X, Hondal RJ, Kraynov VS, Tsai MD.
    Biochemistry; 1996 Jun 04; 35(22):7041-50. PubMed ID: 8679529
    [Abstract] [Full Text] [Related]

  • 18. Refined model for primer/template binding by HIV-1 reverse transcriptase: pre-steady-state kinetic analyses of primer/template binding and nucleotide incorporation events distinguish between different binding modes depending on the nature of the nucleic acid substrate.
    Wöhrl BM, Krebs R, Goody RS, Restle T.
    J Mol Biol; 1999 Sep 17; 292(2):333-44. PubMed ID: 10493879
    [Abstract] [Full Text] [Related]

  • 19. Mechanistic insights into replication across from bulky DNA adducts: a mutant polymerase I allows an N-acetyl-2-aminofluorene adduct to be accommodated during DNA synthesis.
    Lone S, Romano LJ.
    Biochemistry; 2003 Apr 08; 42(13):3826-34. PubMed ID: 12667073
    [Abstract] [Full Text] [Related]

  • 20. Stopped-flow fluorescence study of precatalytic primer strand base-unstacking transitions in the exonuclease cleft of bacteriophage T4 DNA polymerase.
    Otto MR, Bloom LB, Goodman MF, Beechem JM.
    Biochemistry; 1998 Jul 14; 37(28):10156-63. PubMed ID: 9665721
    [Abstract] [Full Text] [Related]

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